Variant report

Variant	rs663933
Chromosome Location	chr6:44660748-44660749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12529132	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1283923	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1283932	0.84[EUR][1000 genomes]
rs1680901	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs227803	0.89[ASN][1000 genomes]
rs227808	0.88[ASN][1000 genomes]
rs227817	0.81[ASN][1000 genomes]
rs2817117	0.86[EUR][1000 genomes]
rs4714811	0.88[ASN][1000 genomes]
rs527082	0.84[EUR][1000 genomes]
rs633313	0.86[EUR][1000 genomes]
rs649700	0.83[EUR][1000 genomes]
rs660953	0.86[EUR][1000 genomes]
rs67850674	0.84[ASN][1000 genomes]
rs679769	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6935492	0.88[ASN][1000 genomes]
rs9296445	0.83[ASN][1000 genomes]
rs9472325	0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs663933	SUPT3H	cis	lymphoblastoid	seeQTL
rs663933	ABCC10	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44657000-44667200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:44660000-44666400	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links