Variant report

Variant	rs9296445
Chromosome Location	chr6:44649758-44649759
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44644937..44647100-chr6:44647799..44650476,2	MCF-7	breast:
2	chr6:44642958..44644936-chr6:44648407..44651154,2	K562	blood:
3	chr6:44642958..44645763-chr6:44648407..44650209,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs227803	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227808	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs227817	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs227818	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs227819	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4711796	0.91[EUR][1000 genomes]
rs4714811	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55643629	0.94[EUR][1000 genomes]
rs663933	0.83[ASN][1000 genomes]
rs67850674	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs679769	0.85[ASN][1000 genomes]
rs6901297	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6935492	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9463007	0.83[EUR][1000 genomes]
rs9463008	0.95[EUR][1000 genomes]
rs9463009	0.95[EUR][1000 genomes]
rs9472321	0.91[EUR][1000 genomes]
rs9472322	0.94[EUR][1000 genomes]
rs9472323	0.87[EUR][1000 genomes]
rs9472324	0.95[EUR][1000 genomes]
rs9472325	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44644400-44652800	Weak transcription	HMEC	breast
2	chr6:44647400-44650000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:44647400-44650800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44647600-44651000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:44647800-44650400	Enhancers	HSMM	muscle
6	chr6:44648200-44652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:44648400-44650000	Enhancers	HSMMtube	muscle
8	chr6:44648600-44652800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:44648800-44650400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:44648800-44652600	Weak transcription	NHEK	skin
11	chr6:44649000-44649800	Bivalent Enhancer	NH-A	brain
12	chr6:44649000-44650000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:44649000-44650000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:44649000-44650000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:44649000-44650400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:44649200-44649800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:44649200-44649800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:44649200-44649800	Bivalent Enhancer	NHDF-Ad	bronchial
19	chr6:44649200-44650000	Bivalent Enhancer	Osteobl	bone
20	chr6:44649200-44650200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:44649400-44649800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:44649400-44649800	Enhancers	Fetal Heart	heart
23	chr6:44649600-44649800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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