Variant report

Variant	rs227803
Chromosome Location	chr6:44665034-44665035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44640493..44642311-chr6:44662709..44665679,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs227808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs227817	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227818	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs227819	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4711796	0.86[EUR][1000 genomes]
rs4714811	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55643629	0.89[EUR][1000 genomes]
rs663933	0.89[ASN][1000 genomes]
rs67850674	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs679769	0.91[ASN][1000 genomes]
rs6901297	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6935492	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9296445	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9463008	0.89[EUR][1000 genomes]
rs9463009	0.89[EUR][1000 genomes]
rs9472321	0.86[EUR][1000 genomes]
rs9472322	0.89[EUR][1000 genomes]
rs9472323	0.82[EUR][1000 genomes]
rs9472324	0.89[EUR][1000 genomes]
rs9472325	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44657000-44667200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:44660000-44666400	Weak transcription	Right Atrium	heart
3	chr6:44661800-44665200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:44662600-44669600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:44663600-44665200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:44663600-44665800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:44663600-44665800	Enhancers	NHDF-Ad	bronchial
8	chr6:44664000-44665400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:44664000-44665600	Enhancers	HSMMtube	muscle
10	chr6:44664200-44665600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr6:44664400-44665400	Bivalent Enhancer	Placenta	Placenta
12	chr6:44664400-44665400	Bivalent Enhancer	Fetal Stomach	stomach
13	chr6:44664400-44665600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:44664400-44667400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:44664400-44667400	Enhancers	Fetal Muscle Leg	muscle
16	chr6:44664600-44665600	Enhancers	HSMM	muscle
17	chr6:44664600-44668600	Weak transcription	NH-A	brain
18	chr6:44664600-44668800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:44664600-44669800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:44664800-44666800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:44665000-44665400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:44665000-44665800	Enhancers	HUES6 Cell Line	embryonic stem cell

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