Variant report

Variant	rs55643629
Chromosome Location	chr6:44644224-44644225
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44642958..44645763-chr6:44648407..44650209,2	K562	blood:
2	chr6:44642958..44644936-chr6:44648407..44651154,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs227803	0.89[EUR][1000 genomes]
rs227808	0.89[EUR][1000 genomes]
rs227817	0.89[EUR][1000 genomes]
rs227818	0.89[EUR][1000 genomes]
rs227819	0.81[EUR][1000 genomes]
rs4711796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4714811	0.89[EUR][1000 genomes]
rs67850674	0.92[EUR][1000 genomes]
rs6901297	0.93[EUR][1000 genomes]
rs6935492	0.90[EUR][1000 genomes]
rs9296445	0.94[EUR][1000 genomes]
rs9463007	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9463008	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9463009	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9472321	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472322	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472323	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472324	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9472325	0.92[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44636400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:44636400-44649200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:44636600-44647400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44637400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:44638400-44644800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:44638600-44645000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:44639200-44647600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:44639400-44647400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:44640000-44644400	Enhancers	HMEC	breast
10	chr6:44640000-44644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:44640200-44645000	Enhancers	NHEK	skin
12	chr6:44641000-44647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:44641000-44647400	Weak transcription	HSMMtube	muscle
14	chr6:44641800-44645200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:44642800-44644600	Weak transcription	Placenta	Placenta
16	chr6:44642800-44646000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:44643000-44645400	Enhancers	HSMM	muscle
18	chr6:44643200-44647400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:44643800-44644400	Enhancers	NHDF-Ad	bronchial
20	chr6:44644000-44644600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:44644000-44644800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:44644000-44647400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:44644200-44645600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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