Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs227803	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs227808	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs227817	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227818	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs227819	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3799965	1.00[ASW][hapmap]
rs4711796	0.87[EUR][1000 genomes]
rs55643629	0.89[EUR][1000 genomes]
rs663933	0.88[ASN][1000 genomes]
rs67850674	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs679769	0.90[ASN][1000 genomes]
rs6901297	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6935492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296445	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9463008	0.90[EUR][1000 genomes]
rs9463009	0.90[EUR][1000 genomes]
rs9472321	0.87[EUR][1000 genomes]
rs9472322	0.89[EUR][1000 genomes]
rs9472323	0.83[EUR][1000 genomes]
rs9472324	0.90[EUR][1000 genomes]
rs9472325	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4714811	ABCC10	cis	cerebellum	SCAN
rs4714811	RUNX2	cis	cerebellum	SCAN
rs4714811	SUPT3H	cis	lymphoblastoid	seeQTL
rs4714811	ENPP5	cis	parietal	SCAN
rs4714811	SUPT3H	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44657000-44667200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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