Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:44644937..44647100-chr6:44647799..44650476,2	MCF-7	breast:
2	chr6:44642958..44644936-chr6:44648407..44651154,2	K562	blood:
3	chr6:44642958..44645763-chr6:44648407..44650209,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs227803	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227808	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227817	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs227818	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs227819	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4711796	0.90[EUR][1000 genomes]
rs4714811	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55643629	0.92[EUR][1000 genomes]
rs663933	0.84[ASN][1000 genomes]
rs679769	0.86[ASN][1000 genomes]
rs6901297	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6935492	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296445	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9463007	0.82[EUR][1000 genomes]
rs9463008	0.93[EUR][1000 genomes]
rs9463009	0.93[EUR][1000 genomes]
rs9472321	0.90[EUR][1000 genomes]
rs9472322	0.92[EUR][1000 genomes]
rs9472323	0.85[EUR][1000 genomes]
rs9472324	0.93[EUR][1000 genomes]
rs9472325	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44644400-44652800	Weak transcription	HMEC	breast
2	chr6:44647400-44650800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:44647600-44651000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:44647800-44650400	Enhancers	HSMM	muscle
5	chr6:44648200-44652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:44648600-44652800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:44648800-44650400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:44648800-44652600	Weak transcription	NHEK	skin
9	chr6:44649000-44650400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:44649200-44650200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:44649800-44650400	Enhancers	Placenta	Placenta
12	chr6:44649800-44650400	Enhancers	Spleen	Spleen

Quick Search: