Variant report

Variant	rs9472321
Chromosome Location	chr6:44642884-44642885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44635305..44638850-chr6:44639424..44643033,3	K562	blood:
2	chr6:44628498..44636418-chr6:44638711..44643963,7	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs227803	0.86[EUR][1000 genomes]
rs227808	0.87[EUR][1000 genomes]
rs227817	0.87[EUR][1000 genomes]
rs227818	0.87[EUR][1000 genomes]
rs4711796	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4714811	0.87[EUR][1000 genomes]
rs55643629	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67850674	0.90[EUR][1000 genomes]
rs6901297	0.91[EUR][1000 genomes]
rs6935492	0.88[EUR][1000 genomes]
rs9296445	0.91[EUR][1000 genomes]
rs9463007	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9463008	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9463009	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9472322	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9472323	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472324	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9472325	0.90[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44636400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:44636400-44649200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:44636600-44647400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44637400-44644000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:44637400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:44638400-44644800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:44638600-44645000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:44639200-44647600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:44639400-44647400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:44639800-44643000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:44640000-44644400	Enhancers	HMEC	breast
12	chr6:44640000-44644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:44640200-44645000	Enhancers	NHEK	skin
14	chr6:44641000-44647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:44641000-44647400	Weak transcription	HSMMtube	muscle
16	chr6:44641800-44645200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:44642000-44643000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:44642000-44643000	Weak transcription	HSMM	muscle
19	chr6:44642600-44643200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:44642600-44644000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:44642800-44643000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:44642800-44644000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:44642800-44644600	Weak transcription	Placenta	Placenta
24	chr6:44642800-44646000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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