Variant report

Variant	rs6651237
Chromosome Location	chr8:126370879-126370880
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16900479	1.00[CHB][hapmap]
rs17318327	0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs17403341	1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs4006653	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58600417	0.81[AFR][1000 genomes]
rs58650877	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60652599	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651234	1.00[ASN][1000 genomes]
rs6651235	1.00[ASN][1000 genomes]
rs6651236	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7004876	1.00[ASN][1000 genomes]
rs73336855	0.83[AFR][1000 genomes]
rs73336867	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338880	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338881	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338901	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2761467	chr8:126368375-126385095	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126322000-126374200	Weak transcription	Aorta	Aorta
2	chr8:126354000-126381200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:126354800-126371800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:126354800-126379800	Weak transcription	Pancreas	Pancrea
5	chr8:126354800-126380400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:126354800-126381600	Weak transcription	Brain Anterior Caudate	brain
7	chr8:126354800-126383200	Weak transcription	Brain Angular Gyrus	brain
8	chr8:126355000-126374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:126355200-126373000	Weak transcription	NH-A	brain
10	chr8:126355200-126374800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:126355200-126374800	Weak transcription	HMEC	breast
12	chr8:126355200-126378800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:126355600-126374200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:126355600-126374400	Weak transcription	NHLF	lung
15	chr8:126355600-126374600	Weak transcription	NHDF-Ad	bronchial
16	chr8:126355600-126375200	Weak transcription	Small Intestine	intestine
17	chr8:126356800-126372000	Weak transcription	Liver	Liver
18	chr8:126358800-126376800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr8:126359400-126372200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:126359600-126371800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr8:126361400-126372000	Weak transcription	Fetal Kidney	kidney
22	chr8:126361800-126371600	Weak transcription	Fetal Intestine Small	intestine
23	chr8:126361800-126372000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:126361800-126383200	Weak transcription	Psoas Muscle	Psoas
25	chr8:126362400-126371800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:126362600-126372800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr8:126362600-126373200	Weak transcription	Osteobl	bone
28	chr8:126362600-126373600	Weak transcription	HSMM	muscle
29	chr8:126362800-126372400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:126363400-126374200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:126365000-126379000	Weak transcription	Fetal Brain Male	brain
32	chr8:126365400-126372000	Weak transcription	HSMMtube	muscle
33	chr8:126365400-126374200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:126365600-126372800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:126365600-126380000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:126365600-126381200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:126365800-126372000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr8:126365800-126372000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr8:126365800-126380000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr8:126367000-126381200	Weak transcription	Fetal Brain Female	brain
41	chr8:126367200-126372000	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:126367200-126374400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr8:126367400-126373800	Weak transcription	A549	lung
44	chr8:126367600-126374800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr8:126367800-126381800	Weak transcription	HepG2	liver
46	chr8:126368000-126373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr8:126368000-126374400	Weak transcription	Esophagus	oesophagus
48	chr8:126368000-126374400	Weak transcription	NHEK	skin
49	chr8:126368200-126374600	Weak transcription	GM12878-XiMat	blood
50	chr8:126368200-126383200	Weak transcription	Brain Cingulate Gyrus	brain

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