Variant report

Variant	rs6657055
Chromosome Location	chr1:211233728-211233729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10863875	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10863876	0.80[AMR][1000 genomes]
rs11119671	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11119672	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11119674	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11119675	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12122529	0.84[AFR][1000 genomes]
rs12127815	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1832430	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4072301	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4364937	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4391724	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4486506	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4628570	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6540652	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6540656	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211224600-211242200	Weak transcription	A549	lung
2	chr1:211227400-211239000	Weak transcription	Fetal Brain Male	brain
3	chr1:211228400-211248200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211229400-211236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:211229800-211248400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:211230200-211235800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:211230200-211236000	Weak transcription	HSMM	muscle
8	chr1:211230400-211236600	Weak transcription	HSMMtube	muscle
9	chr1:211232400-211235000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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