Variant report

Variant	rs11119674
Chromosome Location	chr1:211235181-211235182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10863875	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10863876	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11119671	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119672	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119673	0.84[ASN][1000 genomes]
rs11119675	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12122529	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12123209	0.85[ASN][1000 genomes]
rs12127815	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1832430	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4072301	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4090304	0.81[ASN][1000 genomes]
rs4364937	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4373806	0.81[ASN][1000 genomes]
rs4391724	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4486506	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4628570	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951712	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56087197	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6540652	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6540656	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6657055	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6687686	0.81[ASN][1000 genomes]
rs6701088	0.81[ASN][1000 genomes]
rs946143	0.83[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211224600-211242200	Weak transcription	A549	lung
2	chr1:211227400-211239000	Weak transcription	Fetal Brain Male	brain
3	chr1:211228400-211248200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211229400-211236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:211229800-211248400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:211230200-211235800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:211230200-211236000	Weak transcription	HSMM	muscle
8	chr1:211230400-211236600	Weak transcription	HSMMtube	muscle
9	chr1:211234600-211248400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:211235000-211237000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links