Variant report

Variant	rs6687686
Chromosome Location	chr1:211275293-211275294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10863876	0.89[ASN][1000 genomes]
rs11119672	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs11119674	0.81[ASN][1000 genomes]
rs11119675	0.82[ASN][1000 genomes]
rs12123209	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12564381	0.87[ASN][1000 genomes]
rs4072301	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs4090304	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4364937	0.88[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4373806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4391724	0.84[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4486506	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs4628570	0.80[ASN][1000 genomes]
rs61848582	0.87[ASN][1000 genomes]
rs6540652	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs6540656	0.82[ASN][1000 genomes]
rs6701088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs946143	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9645357	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6687686	KCNH1	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211256800-211276600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:211256800-211277000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:211256800-211282400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:211264400-211277400	Weak transcription	Brain Anterior Caudate	brain
6	chr1:211265400-211277200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:211266400-211280200	Weak transcription	Pancreas	Pancrea
8	chr1:211269800-211278600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:211271400-211286000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211272800-211276000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:211273000-211278000	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:211273200-211277800	Strong transcription	HSMMtube	muscle
13	chr1:211273200-211281200	Weak transcription	A549	lung
14	chr1:211273200-211282400	Strong transcription	HSMM	muscle
15	chr1:211273400-211276400	Weak transcription	Osteobl	bone
16	chr1:211274000-211276800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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