Variant report

Variant	rs6540652
Chromosome Location	chr1:211230021-211230022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10863875	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863876	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11119671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119672	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119673	0.83[ASN][1000 genomes]
rs11119674	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119675	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12122529	0.87[ASW][hapmap];0.88[CEU][hapmap];0.95[MKK][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12123209	0.83[ASN][1000 genomes]
rs12127815	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1832430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364937	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4373806	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs4391724	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4486506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4628570	0.92[CEU][hapmap];0.90[JPT][hapmap];0.84[MKK][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951712	0.85[CEU][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56087197	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6540656	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6657055	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6687686	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs6701088	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs946143	0.85[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs9645357	0.85[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211224600-211242200	Weak transcription	A549	lung
2	chr1:211225800-211232400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:211227400-211239000	Weak transcription	Fetal Brain Male	brain
4	chr1:211228400-211248200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:211228800-211230200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:211228800-211230200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:211229000-211230200	Strong transcription	HSMM	muscle
8	chr1:211229200-211230400	Strong transcription	HSMMtube	muscle
9	chr1:211229400-211236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:211229800-211248400	Weak transcription	Brain Inferior Temporal Lobe	brain

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