Variant report

Variant	rs9645357
Chromosome Location	chr1:211272323-211272324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10863876	0.88[ASN][1000 genomes]
rs11119672	0.85[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs11119675	0.80[ASN][1000 genomes]
rs12123209	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12564381	0.84[ASN][1000 genomes]
rs4072301	0.85[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs4090304	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4364937	0.85[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap]
rs4373806	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4391724	0.82[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4486506	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs61848582	0.84[ASN][1000 genomes]
rs6540652	0.85[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs6540656	0.80[ASN][1000 genomes]
rs6687686	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6701088	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs946143	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211256800-211276600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:211256800-211277000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:211256800-211282400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:211263400-211273000	Weak transcription	HSMMtube	muscle
6	chr1:211264400-211277400	Weak transcription	Brain Anterior Caudate	brain
7	chr1:211265400-211277200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:211266400-211280200	Weak transcription	Pancreas	Pancrea
9	chr1:211269800-211278600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:211271400-211286000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:211271800-211273200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:211271800-211273200	Weak transcription	HSMM	muscle
13	chr1:211272000-211273200	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links