Variant report

Variant	rs10863876
Chromosome Location	chr1:211242360-211242361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10863875	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11119671	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11119672	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11119674	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11119675	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12123209	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12127815	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12564381	0.84[ASN][1000 genomes]
rs1832430	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4072301	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4090304	0.86[ASN][1000 genomes]
rs4364937	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4373806	0.89[ASN][1000 genomes]
rs4391724	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4486506	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4628570	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61848582	0.84[ASN][1000 genomes]
rs6540652	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6540656	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6657055	0.80[AMR][1000 genomes]
rs6687686	0.89[ASN][1000 genomes]
rs6701088	0.89[ASN][1000 genomes]
rs946143	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9645357	0.88[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211228400-211248200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211229800-211248400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:211234600-211248400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:211236000-211248600	Strong transcription	HSMM	muscle
5	chr1:211236800-211248000	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:211240400-211243400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:211241000-211243400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:211241200-211248200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:211241600-211249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:211242000-211242400	Enhancers	NHEK	skin
11	chr1:211242000-211242600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:211242000-211244400	Strong transcription	HSMMtube	muscle
13	chr1:211242200-211242600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:211242200-211242600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:211242200-211242600	Enhancers	A549	lung

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