Variant report

Variant	rs946143
Chromosome Location	chr1:211258161-211258162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10863875	0.82[ASN][1000 genomes]
rs10863876	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11119671	0.82[ASN][1000 genomes]
rs11119672	0.85[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs11119674	0.83[ASN][1000 genomes]
rs11119675	0.84[ASN][1000 genomes]
rs12123209	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12127815	0.82[ASN][1000 genomes]
rs12564381	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1832430	0.82[ASN][1000 genomes]
rs4072301	0.85[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4090304	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4364937	0.84[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4373806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4391724	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs4486506	0.84[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs4628570	0.84[CEU][hapmap];0.80[MKK][hapmap];0.82[ASN][1000 genomes]
rs61848582	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6540652	0.85[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6540656	0.84[ASN][1000 genomes]
rs6687686	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6701088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9645357	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs946143	KCNH1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211249400-211261200	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:211249400-211263600	Weak transcription	Brain Anterior Caudate	brain
3	chr1:211250000-211271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:211250400-211265000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:211255400-211259800	Strong transcription	HSMM	muscle
6	chr1:211256000-211263400	Strong transcription	HSMMtube	muscle
7	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:211256800-211276600	Weak transcription	Brain Angular Gyrus	brain
9	chr1:211256800-211277000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:211256800-211282400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:211257800-211263800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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