Variant report

Variant	rs4628570
Chromosome Location	chr1:211239659-211239660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10863875	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863876	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11119671	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11119672	0.92[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11119673	0.82[ASN][1000 genomes]
rs11119674	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119675	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12122529	0.87[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.89[MKK][hapmap];0.93[YRI][hapmap]
rs12123209	0.84[ASN][1000 genomes]
rs12127815	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1832430	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4072301	0.92[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4090304	0.80[ASN][1000 genomes]
rs4364937	0.92[CEU][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4373806	0.84[CEU][hapmap];0.80[ASN][1000 genomes]
rs4391724	0.96[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4486506	0.92[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4951712	0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[YRI][hapmap]
rs6540652	0.92[CEU][hapmap];0.90[JPT][hapmap];0.84[MKK][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6540656	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6657055	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6687686	0.80[ASN][1000 genomes]
rs6701088	0.83[CEU][hapmap];0.80[ASN][1000 genomes]
rs946143	0.84[CEU][hapmap];0.80[MKK][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211224600-211242200	Weak transcription	A549	lung
2	chr1:211228400-211248200	Weak transcription	Brain Anterior Caudate	brain
3	chr1:211229800-211248400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:211234600-211248400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:211236000-211248600	Strong transcription	HSMM	muscle
6	chr1:211236800-211248000	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:211237000-211240000	Weak transcription	HSMMtube	muscle
8	chr1:211237000-211241000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:211237200-211240400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211237400-211240400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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