Variant report

Variant	rs6658465
Chromosome Location	chr1:146640259-146640260
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:146640180-146640638	HepG2	liver:	n/a	n/a
2	FOXA2	chr1:146640198-146640707	HepG2	liver:	n/a	n/a
3	PBX3	chr1:146640061-146640700	SK-N-SH	brain:	n/a	n/a
4	FOS	chr1:146639712-146640591	MCF10A-Er-Src	breast:	n/a	n/a
5	NFIC	chr1:146640116-146640592	HepG2	liver:	n/a	chr1:146640299-146640316
6	MAZ	chr1:146640258-146640385	Hela-S3	cervix:	n/a	n/a
7	HNF4A	chr1:146640150-146640552	HepG2	liver:	n/a	n/a
8	HDAC2	chr1:146640201-146640621	HepG2	liver:	n/a	chr1:146640365-146640374
9	RFX5	chr1:146640152-146640609	Hela-S3	cervix:	n/a	n/a
10	CEBPB	chr1:146640218-146640641	Hela-S3	cervix:	n/a	n/a
11	SP1	chr1:146640197-146640568	HepG2	liver:	n/a	n/a
12	FOXA1	chr1:146640073-146641075	HepG2	liver:	n/a	n/a
13	NFIC	chr1:146640175-146640489	ECC-1	luminal epithelium:	n/a	chr1:146640299-146640316
14	TBL1XR1	chr1:146640229-146640307	K562	blood:	n/a	n/a
15	MYBL2	chr1:146640120-146640724	HepG2	liver:	n/a	n/a
16	FOXA1	chr1:146640066-146641130	HepG2	liver:	n/a	n/a
17	TEAD4	chr1:146640029-146641154	HepG2	liver:	n/a	n/a
18	EP300	chr1:146640098-146640646	HepG2	liver:	n/a	n/a
19	NFIC	chr1:146639950-146640688	SK-N-SH	brain:	n/a	chr1:146640299-146640316
20	FOXA1	chr1:146640171-146640636	HepG2	liver:	n/a	n/a
21	EP300	chr1:146640191-146640543	Hela-S3	cervix:	n/a	n/a
22	NFIC	chr1:146640024-146640721	HepG2	liver:	n/a	chr1:146640299-146640316
23	TCF7L2	chr1:146640258-146640586	Hela-S3	cervix:	n/a	n/a
24	HNF4A	chr1:146640198-146640627	HepG2	liver:	n/a	n/a
25	FOXA2	chr1:146640064-146641244	HepG2	liver:	n/a	n/a
26	CEBPB	chr1:146640256-146640624	HepG2	liver:	n/a	n/a
27	FOXA1	chr1:146640053-146640680	HepG2	liver:	n/a	n/a
28	HEY1	chr1:146640239-146640659	HepG2	liver:	n/a	n/a
29	MYBL2	chr1:146640033-146640715	HepG2	liver:	n/a	n/a
30	HNF4G	chr1:146640251-146640586	HepG2	liver:	n/a	chr1:146640401-146640416
31	HNF4G	chr1:146640226-146640684	HepG2	liver:	n/a	chr1:146640401-146640416
32	PBX3	chr1:146640167-146640658	SK-N-SH	brain:	n/a	n/a
33	CEBPB	chr1:146640247-146640620	HepG2	liver:	n/a	n/a
34	MXI1	chr1:146640257-146640526	Hela-S3	cervix:	n/a	n/a
35	MBD4	chr1:146640113-146640734	HepG2	liver:	n/a	n/a
36	TCF12	chr1:146640006-146640688	SK-N-SH	brain:	n/a	n/a
37	ARID3A	chr1:146640035-146641006	HepG2	liver:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:146625986..146627688-chr1:146639409..146641762,2	K562	blood:
2	chr1:146639513..146641119-chr1:146727207..146729004,2	MCF-7	breast:
3	chr1:146638044..146647556-chr1:146707628..146717159,48	MCF-7	breast:
4	chr1:146638810..146641230-chr1:146647951..146649743,2	MCF-7	breast:
5	chr1:146638562..146647588-chr1:146711453..146720391,22	K562	blood:
6	chr1:146554115..146557849-chr1:146637949..146646936,17	MCF-7	breast:
7	chr1:146554089..146558005-chr1:146638440..146645674,16	K562	blood:
8	chr1:146580735..146583076-chr1:146639979..146642635,2	MCF-7	breast:
9	chr1:146628338..146632381-chr1:146638568..146643066,4	K562	blood:
10	chr1:146639294..146641009-chr1:146641764..146644028,3	K562	blood:
11	chr1:146637222..146651713-chr1:146712141..146718911,44	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273071	TF binding region
ENSG00000237188	TF binding region
ENSG00000230832	Chromatin interaction
ENSG00000131778	Chromatin interaction
ENSG00000131781	Chromatin interaction
ENSG00000180867	Chromatin interaction

Extended variants
information (count: 193 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10494242	1.00[EUR][1000 genomes]
rs10494243	1.00[EUR][1000 genomes]
rs17159869	0.83[AMR][1000 genomes]
rs17159878	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159880	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159909	0.83[AMR][1000 genomes]
rs17160790	0.83[AMR][1000 genomes]
rs17355733	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17355740	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17355768	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17355789	0.96[EUR][1000 genomes]
rs17355796	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17355817	1.00[EUR][1000 genomes]
rs17355844	1.00[EUR][1000 genomes]
rs17355858	0.96[EUR][1000 genomes]
rs17355899	1.00[EUR][1000 genomes]
rs17355913	1.00[EUR][1000 genomes]
rs17355927	1.00[EUR][1000 genomes]
rs17355962	0.92[EUR][1000 genomes]
rs17355969	0.92[EUR][1000 genomes]
rs17356024	0.92[EUR][1000 genomes]
rs17356031	0.92[EUR][1000 genomes]
rs17359851	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17359865	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17359879	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17360003	1.00[EUR][1000 genomes]
rs17360031	1.00[EUR][1000 genomes]
rs17360059	1.00[EUR][1000 genomes]
rs17360066	1.00[EUR][1000 genomes]
rs28381176	0.92[EUR][1000 genomes]
rs28381180	0.85[EUR][1000 genomes]
rs28381181	0.93[EUR][1000 genomes]
rs28381183	1.00[EUR][1000 genomes]
rs28381188	1.00[EUR][1000 genomes]
rs28381190	1.00[EUR][1000 genomes]
rs28381192	0.86[EUR][1000 genomes]
rs28381193	0.89[EUR][1000 genomes]
rs28381194	1.00[EUR][1000 genomes]
rs28381195	1.00[EUR][1000 genomes]
rs28381200	1.00[EUR][1000 genomes]
rs28381203	1.00[EUR][1000 genomes]
rs28381204	1.00[EUR][1000 genomes]
rs28381205	1.00[EUR][1000 genomes]
rs28381206	1.00[EUR][1000 genomes]
rs28381209	1.00[EUR][1000 genomes]
rs28381225	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28381230	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34838459	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41295821	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41312712	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41480846	1.00[EUR][1000 genomes]
rs55653839	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55701100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55705039	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55710129	1.00[EUR][1000 genomes]
rs55797044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55888723	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56004039	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017341	1.00[EUR][1000 genomes]
rs56047816	1.00[EUR][1000 genomes]
rs56053798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56074784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56079929	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56163155	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56175228	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182581	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56400874	1.00[EUR][1000 genomes]
rs56410162	1.00[EUR][1000 genomes]
rs56743621	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56833520	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57211600	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57247303	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57570045	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58423612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58785568	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59665085	1.00[EUR][1000 genomes]
rs60280517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60603428	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61374973	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61549987	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62623392	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62623395	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659191	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6660848	1.00[EUR][1000 genomes]
rs6663107	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665580	1.00[EUR][1000 genomes]
rs6665934	1.00[EUR][1000 genomes]
rs6668865	1.00[EUR][1000 genomes]
rs6674519	1.00[EUR][1000 genomes]
rs6674643	1.00[EUR][1000 genomes]
rs6678588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6679406	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6681389	1.00[EUR][1000 genomes]
rs6684454	1.00[EUR][1000 genomes]
rs6690541	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72691021	0.92[EUR][1000 genomes]
rs72691048	0.92[EUR][1000 genomes]
rs72692977	0.85[EUR][1000 genomes]
rs72706446	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706447	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706449	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706450	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706452	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706453	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72706457	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706469	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72706501	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706502	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708503	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708504	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708505	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708508	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708509	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708510	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708511	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708514	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708515	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708517	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708518	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72708519	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708520	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708521	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708526	0.83[AMR][1000 genomes]
rs72708527	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708529	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708535	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708537	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708538	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708539	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708544	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708545	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708547	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708548	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708553	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708554	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708555	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708556	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708558	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708563	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72708564	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72708565	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708569	1.00[EUR][1000 genomes]
rs72708571	1.00[EUR][1000 genomes]
rs72708573	1.00[EUR][1000 genomes]
rs72708581	1.00[EUR][1000 genomes]
rs72708582	0.93[EUR][1000 genomes]
rs72708584	0.88[EUR][1000 genomes]
rs72708586	1.00[EUR][1000 genomes]
rs72708592	1.00[EUR][1000 genomes]
rs72708595	1.00[EUR][1000 genomes]
rs72708598	1.00[EUR][1000 genomes]
rs72708600	1.00[EUR][1000 genomes]
rs74119827	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7519713	0.92[EUR][1000 genomes]
rs7520476	1.00[EUR][1000 genomes]
rs7528172	1.00[EUR][1000 genomes]
rs7532458	1.00[EUR][1000 genomes]
rs7541245	1.00[EUR][1000 genomes]
rs7547138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547698	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7556347	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757753	chr1:145883119-146697542	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv872251	chr1:146152553-146803630	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv872252	chr1:146471863-147398135	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
4	nsv999546	chr1:146507577-147356574	Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
5	nsv535123	chr1:146507577-147356574	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
6	nsv492188	chr1:146507649-147381479	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
7	nsv916754	chr1:146507711-147417736	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
8	nsv547673	chr1:146510112-147398135	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
9	nsv547674	chr1:146522722-147396797	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
10	nsv998341	chr1:146531446-147384720	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
11	nsv535124	chr1:146531446-147384720	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
12	nsv1003493	chr1:146531446-147389944	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
13	nsv998209	chr1:146543722-147384720	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
14	nsv535126	chr1:146543722-147384720	Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	110 gene(s)	inside rSNPs	diseases
15	nsv872255	chr1:146550780-146969712	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
16	nsv872256	chr1:146556596-147410973	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
17	nsv1012331	chr1:146603479-147384720	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
18	nsv535131	chr1:146603479-147384720	Genic enhancers Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
19	nsv1009943	chr1:146618929-146893851	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
20	nsv535132	chr1:146618929-146893851	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:146624600-146640400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:146624800-146642600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:146630000-146641200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:146631600-146642800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:146632000-146642400	Weak transcription	Colonic Mucosa	Colon
6	chr1:146632000-146642600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:146632200-146642400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:146632200-146642800	Weak transcription	Gastric	stomach
9	chr1:146632200-146643200	Weak transcription	Spleen	Spleen
10	chr1:146632400-146642000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr1:146632400-146642000	Weak transcription	Fetal Brain Male	brain
12	chr1:146632400-146642200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:146632600-146643000	Weak transcription	Lung	lung
14	chr1:146632800-146642400	Weak transcription	Fetal Kidney	kidney
15	chr1:146633000-146640400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:146633000-146641400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr1:146633200-146641400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:146633200-146641800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr1:146633400-146642400	Weak transcription	Thymus	Thymus
20	chr1:146633400-146642600	Weak transcription	Aorta	Aorta
21	chr1:146633600-146642200	Weak transcription	Left Ventricle	heart
22	chr1:146633600-146642400	Weak transcription	Psoas Muscle	Psoas
23	chr1:146633800-146642600	Weak transcription	Brain Substantia Nigra	brain
24	chr1:146634400-146642600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:146634400-146642600	Weak transcription	Fetal Thymus	thymus
26	chr1:146634600-146642000	Weak transcription	Right Ventricle	heart
27	chr1:146635400-146642400	Weak transcription	Brain Angular Gyrus	brain
28	chr1:146637600-146641400	Enhancers	Fetal Intestine Small	intestine
29	chr1:146637800-146640800	Weak transcription	GM12878-XiMat	blood
30	chr1:146638000-146641000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr1:146638000-146642400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr1:146638200-146640800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr1:146638200-146641200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:146638400-146641400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr1:146638400-146641400	Enhancers	HMEC	breast
36	chr1:146638400-146642400	Enhancers	Hela-S3	cervix
37	chr1:146638600-146640600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr1:146638600-146642000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr1:146638600-146642200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:146638600-146642200	Weak transcription	Adipose Nuclei	Adipose
41	chr1:146638600-146642200	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:146638600-146642200	Weak transcription	Pancreas	Pancrea
43	chr1:146638600-146642400	Enhancers	Fetal Intestine Large	intestine
44	chr1:146638600-146642800	Weak transcription	Esophagus	oesophagus
45	chr1:146638800-146640400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:146638800-146641200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr1:146638800-146641800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr1:146638800-146642200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr1:146638800-146642600	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr1:146639000-146640400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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