The 2.0 version of rSNPBase

Variant report

Variant rs6678588
Chromosome Location chr1:146626483-146626484
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:146618800-146628800 Weak transcription Lung lung
2 chr1:146618800-146628800 Weak transcription Spleen Spleen
3 chr1:146619200-146630600 Weak transcription Gastric stomach
4 chr1:146619800-146628000 Weak transcription HSMMtube muscle
5 chr1:146621600-146629400 Weak transcription NHDF-Ad bronchial
6 chr1:146622200-146627200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr1:146622400-146628000 Weak transcription Primary T cells fromperipheralblood blood
8 chr1:146622800-146630000 Weak transcription Small Intestine intestine
9 chr1:146623000-146627000 Weak transcription Fetal Intestine Large intestine
10 chr1:146623000-146628800 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr1:146623200-146629000 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr1:146623200-146629200 Weak transcription Brain Angular Gyrus brain
13 chr1:146623200-146629400 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:146623200-146629600 Weak transcription Fetal Brain Male brain
15 chr1:146623400-146629200 Weak transcription Fetal Lung lung
16 chr1:146623400-146630400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr1:146623400-146630600 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr1:146623800-146628800 Weak transcription Fetal Stomach stomach
19 chr1:146623800-146629000 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr1:146623800-146629000 Weak transcription Brain Substantia Nigra brain
21 chr1:146623800-146629400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:146623800-146629600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr1:146624000-146627600 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:146624000-146628800 Weak transcription Colon Smooth Muscle Colon
25 chr1:146624000-146629000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr1:146624000-146629000 Weak transcription Fetal Brain Female brain
27 chr1:146624000-146629400 Weak transcription Thymus Thymus
28 chr1:146624000-146630600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:146624000-146631800 Weak transcription Esophagus oesophagus
30 chr1:146624200-146629800 Weak transcription GM12878-XiMat blood
31 chr1:146624200-146632800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:146624200-146637600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:146624400-146627600 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr1:146624400-146628000 Weak transcription Placenta Placenta
35 chr1:146624400-146630400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:146624400-146636000 Strong transcription Skeletal Muscle Female skeletal muscle
37 chr1:146624600-146629200 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr1:146624600-146630600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr1:146624600-146632200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:146624600-146634400 Strong transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:146624600-146639600 Strong transcription Primary T cells from cord blood blood
42 chr1:146624600-146640400 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr1:146624800-146627600 Weak transcription Placenta Amnion Placenta Amnion
44 chr1:146624800-146627800 Strong transcription Muscle Satellite Cultured Cells --
45 chr1:146624800-146628800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:146624800-146629400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr1:146624800-146629600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr1:146624800-146630000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr1:146624800-146632800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr1:146624800-146635000 Strong transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015