Variant report

Variant	rs6681637
Chromosome Location	chr1:180628947-180628948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11487432	0.81[EUR][1000 genomes]
rs12089469	0.84[EUR][1000 genomes]
rs17301405	0.88[EUR][1000 genomes]
rs17301581	0.84[EUR][1000 genomes]
rs17301602	0.84[EUR][1000 genomes]
rs17301762	0.88[EUR][1000 genomes]
rs17301936	0.84[EUR][1000 genomes]
rs17373425	0.92[EUR][1000 genomes]
rs17373501	0.88[EUR][1000 genomes]
rs17373660	0.88[EUR][1000 genomes]
rs59077359	0.88[EUR][1000 genomes]
rs61809308	0.92[EUR][1000 genomes]
rs61809311	0.92[EUR][1000 genomes]
rs61809312	0.92[EUR][1000 genomes]
rs61809314	0.92[EUR][1000 genomes]
rs61809317	0.88[EUR][1000 genomes]
rs61809342	0.88[EUR][1000 genomes]
rs61809345	0.88[EUR][1000 genomes]
rs61809347	0.88[EUR][1000 genomes]
rs61809350	0.88[EUR][1000 genomes]
rs61809351	0.88[EUR][1000 genomes]
rs61809352	0.88[EUR][1000 genomes]
rs61809353	0.84[EUR][1000 genomes]
rs61809354	0.84[EUR][1000 genomes]
rs61809355	0.84[EUR][1000 genomes]
rs61809356	0.84[EUR][1000 genomes]
rs61809357	0.84[EUR][1000 genomes]
rs61809358	0.84[EUR][1000 genomes]
rs61811160	0.84[EUR][1000 genomes]
rs61811190	0.88[EUR][1000 genomes]
rs61811191	0.88[EUR][1000 genomes]
rs61811192	0.88[EUR][1000 genomes]
rs61811193	0.88[EUR][1000 genomes]
rs61811197	0.88[EUR][1000 genomes]
rs61811199	0.88[EUR][1000 genomes]
rs61811202	0.88[EUR][1000 genomes]
rs61811204	0.88[EUR][1000 genomes]
rs61811221	0.88[EUR][1000 genomes]
rs61811222	0.88[EUR][1000 genomes]
rs61811223	0.84[EUR][1000 genomes]
rs61811224	0.84[EUR][1000 genomes]
rs61811225	0.84[EUR][1000 genomes]
rs61811227	0.83[EUR][1000 genomes]
rs6664966	0.88[EUR][1000 genomes]
rs6674012	0.88[EUR][1000 genomes]
rs72707419	0.84[EUR][1000 genomes]
rs72721001	0.87[EUR][1000 genomes]
rs72723004	0.88[EUR][1000 genomes]
rs72723006	0.88[EUR][1000 genomes]
rs72723010	0.84[EUR][1000 genomes]
rs72723014	0.84[EUR][1000 genomes]
rs72723023	0.88[EUR][1000 genomes]
rs72723026	0.88[EUR][1000 genomes]
rs72723027	0.88[EUR][1000 genomes]
rs72723035	0.88[EUR][1000 genomes]
rs72723043	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180602000-180645200	Weak transcription	Gastric	stomach
2	chr1:180613200-180632600	Weak transcription	Aorta	Aorta
3	chr1:180619600-180632600	Weak transcription	Pancreas	Pancrea
4	chr1:180619600-180634600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:180625800-180634800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:180627600-180632800	Weak transcription	A549	lung
7	chr1:180627600-180640000	Weak transcription	Fetal Heart	heart
8	chr1:180627800-180634200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:180628200-180631600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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