Variant report

Variant	rs61809353
Chromosome Location	chr1:180711512-180711513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180704432..180707887-chr1:180709053..180714236,4	MCF-7	breast:
2	chr1:180710967..180713391-chr1:180719527..180722216,2	K562	blood:
3	chr1:180711448..180714417-chr1:180716306..180718822,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11487432	0.81[EUR][1000 genomes]
rs12089469	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301405	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17301581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301602	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301762	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17301936	0.92[EUR][1000 genomes]
rs17302040	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17302075	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17302102	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17373425	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17373501	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17373660	0.96[EUR][1000 genomes]
rs17374151	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3908047	0.84[EUR][1000 genomes]
rs55960112	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59077359	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809308	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809311	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809312	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809314	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809317	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809334	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61809342	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809345	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809347	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809350	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809351	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809352	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809354	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809355	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809356	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809357	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809358	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811160	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811190	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811191	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811192	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811193	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811197	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811199	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811202	0.96[EUR][1000 genomes]
rs61811204	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811221	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811222	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811223	0.92[EUR][1000 genomes]
rs61811224	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61811225	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61811227	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61811245	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61811248	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6664966	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6674012	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6681637	0.84[EUR][1000 genomes]
rs6697299	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72707419	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72707494	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72721001	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72723004	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723006	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723010	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723014	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723023	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723026	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723027	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723035	0.96[EUR][1000 genomes]
rs72723043	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9725163	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180704200-180711800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:180704200-180713200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:180704400-180712600	Weak transcription	K562	blood
4	chr1:180708400-180722400	Weak transcription	Aorta	Aorta
5	chr1:180710000-180717200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:180710200-180712800	Weak transcription	Primary B cells from cord blood	blood
7	chr1:180710200-180714400	Weak transcription	Left Ventricle	heart
8	chr1:180710400-180712600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:180711400-180721200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links