Variant report

Variant	rs61811245
Chromosome Location	chr1:180863151-180863152
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180863020..180866201-chr1:180866515..180869291,3	MCF-7	breast:
2	chr1:180862780..180864587-chr1:181128618..181130190,2	K562	blood:
3	chr1:180862962..180864645-chr1:181108857..181111831,2	MCF-7	breast:
4	chr1:180861170..180863279-chr1:180863487..180865268,2	K562	blood:
5	chr1:180851999..180855713-chr1:180860478..180863788,4	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs12089469	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17301405	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17301581	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17301602	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17301762	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17301936	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17302040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17302075	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17302102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17373501	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17373660	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17374151	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3845409	0.83[AMR][1000 genomes]
rs3908047	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55960112	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59077359	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809317	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809334	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61809342	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809345	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809347	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809350	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809351	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809352	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809353	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809354	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809355	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809356	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809357	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61809358	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61811160	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61811190	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811191	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811192	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811193	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811197	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811199	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811202	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811204	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811221	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811222	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811223	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811227	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61811248	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6664966	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6674012	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6697299	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72707419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707494	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72721001	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72723004	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723006	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723010	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72723014	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72723023	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723026	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723027	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723035	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9725163	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180805800-180881000	Weak transcription	Aorta	Aorta
2	chr1:180812200-180867000	Weak transcription	Ovary	ovary
3	chr1:180824000-180867600	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:180824000-180880800	Weak transcription	Right Ventricle	heart
5	chr1:180828600-180867800	Weak transcription	HSMM	muscle
6	chr1:180830000-180867600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:180835800-180870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:180841000-180867800	Weak transcription	Lung	lung
9	chr1:180844200-180872200	Weak transcription	Esophagus	oesophagus
10	chr1:180844400-180867400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:180845800-180869000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:180847400-180875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:180849400-180867200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:180851000-180867000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:180851400-180867400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:180851400-180867600	Weak transcription	Fetal Heart	heart
17	chr1:180851600-180864200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:180851600-180867600	Weak transcription	Brain Germinal Matrix	brain
19	chr1:180851600-180867800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:180851800-180867400	Weak transcription	Fetal Intestine Small	intestine
21	chr1:180852000-180870400	Weak transcription	A549	lung
22	chr1:180853600-180867200	Weak transcription	Adipose Nuclei	Adipose
23	chr1:180853800-180867800	Weak transcription	Fetal Stomach	stomach
24	chr1:180854000-180866400	Weak transcription	Primary B cells from cord blood	blood
25	chr1:180854400-180866800	Weak transcription	Left Ventricle	heart
26	chr1:180854800-180866800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:180857200-180867400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr1:180857600-180869600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:180858400-180870600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:180858800-180867400	Weak transcription	Fetal Brain Female	brain
31	chr1:180861200-180880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:180861600-180863600	Enhancers	Right Atrium	heart
33	chr1:180861800-180863600	Enhancers	Fetal Thymus	thymus
34	chr1:180862200-180867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:180862600-180863400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:180862800-180863200	Enhancers	Primary hematopoietic stem cells	blood
37	chr1:180862800-180863200	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr1:180862800-180863200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr1:180862800-180863200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr1:180862800-180863200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:180862800-180863200	Enhancers	Spleen	Spleen
42	chr1:180862800-180863400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:180862800-180863600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr1:180863000-180863200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr1:180863000-180863200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr1:180863000-180863600	Enhancers	Primary T cells from cord blood	blood

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