The 2.0 version of rSNPBase

Variant report

Variant rs17302040
Chromosome Location chr1:180856698-180856699
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180805800-180881000 Weak transcription Aorta Aorta
2 chr1:180812200-180867000 Weak transcription Ovary ovary
3 chr1:180822000-180862800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:180822800-180862800 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr1:180823600-180860000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr1:180823800-180862600 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr1:180824000-180867600 Weak transcription Fetal Muscle Leg muscle
8 chr1:180824000-180880800 Weak transcription Right Ventricle heart
9 chr1:180828600-180867800 Weak transcription HSMM muscle
10 chr1:180830000-180867600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr1:180831200-180858600 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr1:180832800-180861800 Weak transcription HepG2 liver
13 chr1:180835400-180862800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr1:180835800-180858800 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr1:180835800-180861600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr1:180835800-180870400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:180841000-180867800 Weak transcription Lung lung
18 chr1:180842200-180857200 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr1:180842200-180857600 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr1:180842200-180858600 Weak transcription H1 Cell Line embryonic stem cell
21 chr1:180842400-180858000 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr1:180843600-180856800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr1:180843600-180862800 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:180843800-180858000 Weak transcription Primary B cells from peripheral blood blood
25 chr1:180843800-180858600 Weak transcription HMEC breast
26 chr1:180844200-180872200 Weak transcription Esophagus oesophagus
27 chr1:180844400-180858000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr1:180844400-180867400 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr1:180845800-180869000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:180847400-180875400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:180848800-180857400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:180849400-180867200 Weak transcription H9 Cell Line embryonic stem cell
33 chr1:180851000-180867000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr1:180851200-180858400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:180851400-180867400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:180851400-180867600 Weak transcription Fetal Heart heart
37 chr1:180851600-180857800 Weak transcription GM12878-XiMat blood
38 chr1:180851600-180858600 Weak transcription Fetal Brain Male brain
39 chr1:180851600-180860200 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr1:180851600-180862600 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr1:180851600-180864200 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr1:180851600-180867600 Weak transcription Brain Germinal Matrix brain
43 chr1:180851600-180867800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr1:180851800-180858000 Weak transcription Fetal Brain Female brain
45 chr1:180851800-180861600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr1:180851800-180867400 Weak transcription Fetal Intestine Small intestine
47 chr1:180852000-180870400 Weak transcription A549 lung
48 chr1:180852800-180858400 Weak transcription Primary monocytes fromperipheralblood blood
49 chr1:180853600-180857200 Weak transcription Dnd41 blood
50 chr1:180853600-180857400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015