Variant report

Variant	rs3845409
Chromosome Location	chr1:180877740-180877741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr1:180877615-180879264	GM18951	blood:	n/a	n/a
2	WRNIP1	chr1:180877682-180879385	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180855821..180859018-chr1:180875717..180879005,3	MCF-7	breast:
2	chr1:180873512..180876781-chr1:180876890..180880881,3	K562	blood:

Variant related genes	Relation type
KIAA1614	TF binding region
ENSG00000225857	Chromatin interaction
ENSG00000143324	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12089469	0.83[AMR][1000 genomes]
rs17301581	0.83[AMR][1000 genomes]
rs17301602	0.83[AMR][1000 genomes]
rs17301762	0.83[AMR][1000 genomes]
rs17302040	0.83[AMR][1000 genomes]
rs17302075	0.83[AMR][1000 genomes]
rs17302102	0.83[AMR][1000 genomes]
rs17374151	0.83[AMR][1000 genomes]
rs3845410	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4382679	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4652537	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55960112	0.83[AMR][1000 genomes]
rs59077359	0.83[AMR][1000 genomes]
rs61809354	0.83[AMR][1000 genomes]
rs61809355	0.83[AMR][1000 genomes]
rs61809356	0.83[AMR][1000 genomes]
rs61809357	0.83[AMR][1000 genomes]
rs61809358	0.83[AMR][1000 genomes]
rs61811160	0.83[AMR][1000 genomes]
rs61811190	0.83[AMR][1000 genomes]
rs61811191	0.83[AMR][1000 genomes]
rs61811192	0.83[AMR][1000 genomes]
rs61811193	0.83[AMR][1000 genomes]
rs61811197	0.83[AMR][1000 genomes]
rs61811199	0.83[AMR][1000 genomes]
rs61811204	0.83[AMR][1000 genomes]
rs61811221	0.83[AMR][1000 genomes]
rs61811222	0.83[AMR][1000 genomes]
rs61811224	0.83[AMR][1000 genomes]
rs61811225	0.83[AMR][1000 genomes]
rs61811227	0.83[AMR][1000 genomes]
rs61811245	0.83[AMR][1000 genomes]
rs61811248	0.83[AMR][1000 genomes]
rs6674012	0.83[AMR][1000 genomes]
rs6697299	0.83[AMR][1000 genomes]
rs72707419	0.83[AMR][1000 genomes]
rs72707494	0.83[AMR][1000 genomes]
rs72723010	0.83[AMR][1000 genomes]
rs72723014	0.83[AMR][1000 genomes]
rs72723023	0.83[AMR][1000 genomes]
rs72723026	0.83[AMR][1000 genomes]
rs72723027	0.83[AMR][1000 genomes]
rs72723043	0.83[AMR][1000 genomes]
rs9725163	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180805800-180881000	Weak transcription	Aorta	Aorta
2	chr1:180824000-180880800	Weak transcription	Right Ventricle	heart
3	chr1:180861200-180880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:180868000-180878600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:180868400-180878400	Weak transcription	Fetal Lung	lung
6	chr1:180868800-180879400	Weak transcription	Fetal Stomach	stomach
7	chr1:180868800-180880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:180868800-180881000	Weak transcription	Right Atrium	heart
9	chr1:180869600-180881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:180869800-180880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:180870800-180880600	Weak transcription	Brain Germinal Matrix	brain
12	chr1:180875000-180879800	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:180875800-180877800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:180877200-180878000	Enhancers	GM12878-XiMat	blood
15	chr1:180877400-180877800	Strong transcription	Fetal Muscle Leg	muscle
16	chr1:180877400-180878200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr1:180877600-180881200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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