The 2.0 version of rSNPBase

Variant report

Variant rs61811221
Chromosome Location chr1:180787134-180787135
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180713000-180814200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:180755400-180803800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr1:180755400-180820400 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr1:180756800-180810200 Weak transcription Fetal Brain Male brain
5 chr1:180758000-180804000 Weak transcription Duodenum Mucosa Duodenum
6 chr1:180759000-180794800 Weak transcription Fetal Intestine Small intestine
7 chr1:180761200-180789200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr1:180761400-180794000 Weak transcription Primary B cells from peripheral blood blood
9 chr1:180761400-180796400 Weak transcription HMEC breast
10 chr1:180761400-180804600 Weak transcription Aorta Aorta
11 chr1:180763600-180806800 Weak transcription Psoas Muscle Psoas
12 chr1:180767400-180820400 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr1:180767600-180795400 Weak transcription Thymus Thymus
14 chr1:180768000-180812000 Weak transcription Pancreas Pancrea
15 chr1:180769000-180802000 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:180771000-180813600 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr1:180772000-180789400 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:180772000-180789400 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:180772000-180823200 Weak transcription Fetal Stomach stomach
20 chr1:180772200-180801800 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:180773000-180799800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr1:180773000-180802200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr1:180773400-180849200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr1:180773800-180796600 Weak transcription Spleen Spleen
25 chr1:180773800-180853200 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:180774000-180806800 Weak transcription Placenta Placenta
27 chr1:180774400-180797200 Weak transcription Fetal Muscle Trunk muscle
28 chr1:180775000-180787400 Weak transcription GM12878-XiMat blood
29 chr1:180775000-180794000 Weak transcription NH-A brain
30 chr1:180775000-180831600 Weak transcription Brain Hippocampus Middle brain
31 chr1:180775600-180796400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:180776400-180798400 Weak transcription Stomach Smooth Muscle stomach
33 chr1:180776400-180801800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:180776600-180790400 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr1:180776600-180801800 Weak transcription Dnd41 blood
36 chr1:180777600-180795800 Weak transcription A549 lung
37 chr1:180778400-180789400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:180778400-180789600 Weak transcription Fetal Brain Female brain
39 chr1:180778400-180790200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:180778400-180794200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr1:180778400-180799400 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr1:180778600-180805600 Weak transcription Brain Germinal Matrix brain
43 chr1:180779000-180807400 Weak transcription Right Ventricle heart
44 chr1:180779800-180850800 Weak transcription Small Intestine intestine
45 chr1:180780000-180801600 Weak transcription Brain Angular Gyrus brain
46 chr1:180781400-180796000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:180781600-180801600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr1:180781600-180805600 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr1:180781800-180794200 Weak transcription Primary T helper cells fromperipheralblood blood
50 chr1:180781800-180795600 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015