Variant report

Variant	rs6674012
Chromosome Location	chr1:180739039-180739040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11487432	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs12089469	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17301370	1.00[CEU][hapmap]
rs17301405	0.89[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301581	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17301602	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17301762	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301936	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17302040	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17302075	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17302102	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17373383	1.00[CEU][hapmap]
rs17373425	0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17373501	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17373660	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17374151	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3845409	0.83[AMR][1000 genomes]
rs3908047	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55960112	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59077359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809308	0.96[EUR][1000 genomes]
rs61809311	0.96[EUR][1000 genomes]
rs61809312	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809314	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809317	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809334	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61809342	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809345	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809347	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809350	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809351	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809352	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61809353	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809354	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809355	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809356	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809357	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61809358	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811160	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811202	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811223	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811224	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811225	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811227	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61811245	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61811248	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6664966	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6681637	0.88[EUR][1000 genomes]
rs6685113	0.80[CEU][hapmap]
rs6697299	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72707419	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72707494	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72721001	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72723004	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723006	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723010	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723014	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72723023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723035	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72723043	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7556184	0.80[CEU][hapmap]
rs9725163	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:180713400-180742200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:180714800-180740600	Weak transcription	Primary B cells from cord blood	blood
4	chr1:180715400-180747600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:180722600-180751000	Weak transcription	Left Ventricle	heart
6	chr1:180731800-180742400	Weak transcription	NHLF	lung
7	chr1:180732600-180740600	Weak transcription	HSMM	muscle
8	chr1:180734600-180739800	Weak transcription	Fetal Heart	heart
9	chr1:180734800-180739600	Weak transcription	Fetal Brain Female	brain
10	chr1:180734800-180742200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:180736000-180739600	Weak transcription	Fetal Brain Male	brain
12	chr1:180736800-180740600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:180738000-180751200	Weak transcription	Brain Anterior Caudate	brain
14	chr1:180739000-180740200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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