Variant report
| Variant | rs6699590 |
|---|---|
| Chromosome Location | chr1:84529557-84529558 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:84528524..84531344-chr1:84538975..84541375,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11163870 | 0.96[ASN][1000 genomes] |
| rs12094835 | 0.96[ASN][1000 genomes] |
| rs12129674 | 0.82[ASN][1000 genomes] |
| rs12563929 | 0.86[ASN][1000 genomes] |
| rs12567738 | 0.86[ASN][1000 genomes] |
| rs12734711 | 0.84[ASN][1000 genomes] |
| rs1521519 | 0.84[ASN][1000 genomes] |
| rs17130873 | 0.86[ASN][1000 genomes] |
| rs17475438 | 0.96[ASN][1000 genomes] |
| rs34654680 | 0.88[ASN][1000 genomes] |
| rs34880060 | 0.86[ASN][1000 genomes] |
| rs34972329 | 0.88[ASN][1000 genomes] |
| rs35000319 | 0.88[ASN][1000 genomes] |
| rs35105659 | 0.88[ASN][1000 genomes] |
| rs35760860 | 0.86[ASN][1000 genomes] |
| rs35960022 | 0.88[ASN][1000 genomes] |
| rs41300540 | 0.82[ASN][1000 genomes] |
| rs57443421 | 0.96[ASN][1000 genomes] |
| rs59779864 | 0.92[ASN][1000 genomes] |
| rs60455471 | 1.00[ASN][1000 genomes] |
| rs61360062 | 0.81[ASN][1000 genomes] |
| rs61766872 | 0.96[ASN][1000 genomes] |
| rs71652665 | 0.86[ASN][1000 genomes] |
| rs71652666 | 0.86[ASN][1000 genomes] |
| rs71652667 | 0.86[ASN][1000 genomes] |
| rs72721436 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1732 | chr1:84499098-84544635 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv871655 | chr1:84517261-84550849 | Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:84528400-84532600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
