The 2.0 version of rSNPBase

Variant report

Variant rs71652666
Chromosome Location chr1:84551960-84551961
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84544600-84556200 Weak transcription Pancreas Pancrea
2 chr1:84544600-84557200 Weak transcription Gastric stomach
3 chr1:84544800-84556000 Weak transcription Primary T cells from cord blood blood
4 chr1:84544800-84556200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:84545000-84553400 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr1:84545000-84554200 Weak transcription HSMM muscle
7 chr1:84545000-84554400 Weak transcription A549 lung
8 chr1:84545000-84554600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:84545000-84554800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:84545000-84554800 Weak transcription HSMMtube muscle
11 chr1:84545000-84556200 Weak transcription Primary hematopoietic stem cells blood
12 chr1:84545000-84557200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr1:84545000-84558800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:84545000-84560600 Weak transcription Fetal Lung lung
15 chr1:84545000-84561200 Weak transcription Ovary ovary
16 chr1:84545000-84566800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr1:84545000-84570000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr1:84545200-84554600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:84545200-84554800 Weak transcription NHEK skin
20 chr1:84545200-84555400 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:84545200-84568600 Weak transcription iPS-18 Cell Line embryonic stem cell
22 chr1:84545400-84556000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:84545400-84560800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:84545800-84552800 Weak transcription Brain Germinal Matrix brain
25 chr1:84545800-84553600 Weak transcription Fetal Heart heart
26 chr1:84545800-84568600 Weak transcription Stomach Smooth Muscle stomach
27 chr1:84546000-84554400 Weak transcription Hela-S3 cervix
28 chr1:84546400-84555000 Weak transcription Pancreatic Islets Pancreatic Islet
29 chr1:84546400-84560400 Weak transcription Dnd41 blood
30 chr1:84549000-84554200 Weak transcription Brain Hippocampus Middle brain
31 chr1:84549200-84555000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:84549400-84553600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:84549800-84554600 Weak transcription Brain Cingulate Gyrus brain
34 chr1:84549800-84555000 Weak transcription Brain Inferior Temporal Lobe brain
35 chr1:84550000-84554600 Weak transcription Brain Substantia Nigra brain
36 chr1:84551200-84552200 Strong transcription Cortex derived primary cultured neurospheres brain
37 chr1:84551400-84552000 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
38 chr1:84551400-84552000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:84551400-84552000 Strong transcription Fetal Intestine Large intestine
40 chr1:84551400-84552200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:84551400-84552200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:84551400-84552200 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr1:84551400-84552200 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:84551400-84552200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr1:84551400-84552400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr1:84551400-84552600 Strong transcription Fetal Intestine Small intestine
47 chr1:84551400-84552600 Strong transcription Fetal Stomach stomach
48 chr1:84551600-84552000 Enhancers K562 blood
49 chr1:84551600-84552200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
50 chr1:84551600-84552200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015