Variant report

Variant	rs6705574
Chromosome Location	chr2:160896323-160896324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160883421..160886605-chr2:160893370..160896450,3	K562	blood:
2	chr2:160891134..160893883-chr2:160896076..160898964,2	K562	blood:
3	chr2:160896139..160898226-chr2:160900931..160903215,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10497213	0.90[JPT][hapmap]
rs10929965	0.88[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10929966	0.88[ASN][1000 genomes]
rs13001911	0.86[JPT][hapmap]
rs1511218	0.88[ASN][1000 genomes]
rs16844848	0.86[JPT][hapmap];1.00[MKK][hapmap]
rs16844863	0.86[JPT][hapmap];1.00[MKK][hapmap]
rs16844866	0.86[JPT][hapmap]
rs16844875	1.00[ASW][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap]
rs17216980	0.90[JPT][hapmap]
rs17218566	0.86[JPT][hapmap]
rs17241282	0.89[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17241792	0.81[ASN][1000 genomes]
rs17341301	0.88[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs17830755	0.90[ASN][1000 genomes]
rs17830904	0.89[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17830940	0.89[ASN][1000 genomes]
rs17831161	0.88[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs17831191	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs17831251	0.94[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs17831329	0.81[ASN][1000 genomes]
rs2124969	0.90[JPT][hapmap]
rs2175416	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2198918	0.86[JPT][hapmap]
rs2305818	0.86[JPT][hapmap]
rs2305819	0.90[JPT][hapmap]
rs2715928	0.84[CHB][hapmap]
rs34248629	0.88[ASN][1000 genomes]
rs35771982	0.89[ASN][1000 genomes]
rs3749117	0.89[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3749119	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs3792192	0.89[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4292050	0.90[JPT][hapmap]
rs4664308	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4665138	0.89[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4665140	0.88[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4665141	0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4665147	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4665148	0.81[ASN][1000 genomes]
rs4665161	0.86[JPT][hapmap]
rs4665162	0.86[JPT][hapmap]
rs55668231	0.86[ASN][1000 genomes]
rs56293836	0.86[ASN][1000 genomes]
rs56297666	0.87[ASN][1000 genomes]
rs59137532	0.87[ASN][1000 genomes]
rs62175487	0.91[ASN][1000 genomes]
rs62175488	0.91[ASN][1000 genomes]
rs62175515	0.88[ASN][1000 genomes]
rs62175517	0.86[ASN][1000 genomes]
rs66484345	0.91[ASN][1000 genomes]
rs66667042	0.90[ASN][1000 genomes]
rs6707458	0.94[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6719686	0.88[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6722275	0.89[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6728154	1.00[AFR][1000 genomes]
rs6731260	0.90[JPT][hapmap]
rs6732107	0.86[JPT][hapmap]
rs6739867	0.90[JPT][hapmap]
rs6759836	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs72621699	0.85[ASN][1000 genomes]
rs7563607	0.87[ASN][1000 genomes]
rs7590956	1.00[ASW][hapmap]
rs877200	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs925410	0.94[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160828600-160907200	Weak transcription	Small Intestine	intestine
2	chr2:160862800-160899600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:160879400-160908000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:160879800-160907800	Weak transcription	NHEK	skin
5	chr2:160881200-160912000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:160881200-160913400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:160881600-160898400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr2:160881600-160900800	Weak transcription	Spleen	Spleen
9	chr2:160881600-160902000	Weak transcription	Esophagus	oesophagus
10	chr2:160884000-160911600	Weak transcription	Fetal Kidney	kidney
11	chr2:160885600-160896800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:160886000-160901400	Weak transcription	Lung	lung
13	chr2:160888000-160902800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:160890600-160907800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:160891000-160902200	Strong transcription	Fetal Intestine Large	intestine
16	chr2:160891200-160905600	Weak transcription	HSMM	muscle
17	chr2:160891400-160899000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:160892000-160896600	Weak transcription	Adipose Nuclei	Adipose
19	chr2:160893000-160900400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:160893200-160902200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:160893800-160897000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:160894000-160897600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:160894000-160899400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr2:160895200-160896600	Weak transcription	NHDF-Ad	bronchial
25	chr2:160895200-160897600	Enhancers	Hela-S3	cervix
26	chr2:160895200-160899800	Enhancers	HUVEC	blood vessel
27	chr2:160895200-160911600	Weak transcription	HMEC	breast
28	chr2:160895400-160897200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:160895400-160899600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr2:160895600-160898000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr2:160895600-160898000	Weak transcription	Fetal Intestine Small	intestine
32	chr2:160895600-160901400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:160895800-160896400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:160895800-160896400	Enhancers	Fetal Stomach	stomach
35	chr2:160895800-160896800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:160895800-160897000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:160895800-160897200	Enhancers	Rectal Smooth Muscle	rectum
38	chr2:160895800-160897200	Enhancers	NH-A	brain
39	chr2:160895800-160898200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr2:160895800-160898200	Enhancers	Osteobl	bone
41	chr2:160896000-160896400	Enhancers	Aorta	Aorta
42	chr2:160896000-160896400	Enhancers	Ovary	ovary
43	chr2:160896000-160896400	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr2:160896000-160896400	Flanking Active TSS	A549	lung
45	chr2:160896000-160896600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr2:160896000-160896600	Enhancers	Fetal Lung	lung
47	chr2:160896200-160896400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:160896200-160896400	Enhancers	Colon Smooth Muscle	Colon
49	chr2:160896200-160896400	Genic enhancers	HSMMtube	muscle
50	chr2:160896200-160896600	Enhancers	H1 Cell Line	embryonic stem cell

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