Variant report

Variant	rs10497213
Chromosome Location	chr2:160963603-160963604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160953931..160959530-chr2:160960677..160963747,5	MCF-7	breast:
2	chr2:160955602..160957276-chr2:160963515..160965227,2	MCF-7	breast:
3	chr2:160944054..160944666-chr2:160963508..160964350,2	K562	blood:
4	chr2:160963372..160965662-chr2:161085963..161088165,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10497211	0.87[YRI][hapmap]
rs10929965	0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10929966	0.82[ASN][1000 genomes]
rs12987602	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13000870	0.87[YRI][hapmap]
rs13001911	0.80[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs13010138	0.87[YRI][hapmap]
rs1511218	0.82[ASN][1000 genomes]
rs16844724	0.87[YRI][hapmap]
rs16844848	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs16844863	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs16844866	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs17216980	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17218566	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs17241282	0.86[JPT][hapmap]
rs17241792	0.86[ASN][1000 genomes]
rs17241973	0.87[ASN][1000 genomes]
rs17341301	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17830904	0.86[JPT][hapmap]
rs17831161	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs17831191	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs17831251	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs17831329	0.88[ASN][1000 genomes]
rs2124969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2175416	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2198918	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2305818	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2305819	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs34248629	0.82[ASN][1000 genomes]
rs3749117	0.86[JPT][hapmap]
rs3749119	0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3792192	0.86[JPT][hapmap]
rs4233681	0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4292050	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4363984	0.98[ASN][1000 genomes]
rs4520993	1.00[ASN][1000 genomes]
rs4520994	1.00[ASN][1000 genomes]
rs4522556	0.88[YRI][hapmap]
rs4637057	1.00[ASN][1000 genomes]
rs4664308	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4665138	0.86[JPT][hapmap]
rs4665140	0.86[JPT][hapmap]
rs4665141	0.87[JPT][hapmap]
rs4665147	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4665148	0.88[ASN][1000 genomes]
rs4665161	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs4665162	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs56172865	0.96[ASN][1000 genomes]
rs56293836	0.83[ASN][1000 genomes]
rs56297666	0.80[ASN][1000 genomes]
rs58354887	0.94[ASN][1000 genomes]
rs62175515	0.82[ASN][1000 genomes]
rs62175517	0.83[ASN][1000 genomes]
rs62175552	1.00[ASN][1000 genomes]
rs62175559	1.00[ASN][1000 genomes]
rs62177860	1.00[ASN][1000 genomes]
rs62177891	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6705574	0.90[JPT][hapmap]
rs6707388	0.99[ASN][1000 genomes]
rs6707458	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6719686	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6722275	0.86[JPT][hapmap]
rs6728154	0.87[ASN][1000 genomes]
rs6731260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6732107	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs6739867	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6744567	0.98[ASN][1000 genomes]
rs6759836	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs72621702	0.83[ASN][1000 genomes]
rs7563607	0.83[ASN][1000 genomes]
rs7567781	0.83[ASN][1000 genomes]
rs7593593	0.98[ASN][1000 genomes]
rs877200	0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs925410	0.95[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459929	chr2:160963603-161079435	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv583497	chr2:160963603-161079435	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160950800-160967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:160953200-160970800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:160954600-160970800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:160954600-160993000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:160954800-160963800	Weak transcription	Fetal Intestine Large	intestine
6	chr2:160954800-160966200	Weak transcription	Fetal Intestine Small	intestine
7	chr2:160955400-160965000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:160955800-160968800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:160956200-160965600	Strong transcription	HMEC	breast
10	chr2:160957000-160970200	Weak transcription	Pancreas	Pancrea
11	chr2:160957400-160981200	Weak transcription	Lung	lung
12	chr2:160958400-160965200	Strong transcription	NHEK	skin
13	chr2:160959200-160963800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:160959200-161004200	Weak transcription	Gastric	stomach
15	chr2:160959400-160985200	Weak transcription	Esophagus	oesophagus
16	chr2:160959400-161032800	Weak transcription	Psoas Muscle	Psoas
17	chr2:160959800-160965800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:160960000-160966400	Weak transcription	HSMMtube	muscle
19	chr2:160960400-160965600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:160960800-160964600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:160961000-160965600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:160962000-160966200	Strong transcription	HSMM	muscle
23	chr2:160962400-160963800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:160962400-160970800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:160962800-160971000	Strong transcription	Placenta Amnion	Placenta Amnion

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