Variant report

Variant	rs17241973
Chromosome Location	chr2:160918601-160918602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10497213	0.87[ASN][1000 genomes]
rs10929965	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10929966	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12987602	0.87[ASN][1000 genomes]
rs1511218	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16844715	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17216980	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17241792	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17341301	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17831161	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17831191	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17831251	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17831329	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2124969	0.84[AMR][1000 genomes]
rs2175416	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34248629	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3749119	0.93[ASN][1000 genomes]
rs4233681	0.87[ASN][1000 genomes]
rs4292050	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4363984	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4520993	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4520994	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4637057	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4664308	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4665147	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4665148	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56172865	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56293836	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56297666	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58354887	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62175515	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62175517	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62175552	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62175559	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62177860	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6707388	0.87[ASN][1000 genomes]
rs6707458	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6719686	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6731260	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6739867	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6744567	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6759836	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6759924	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72621699	0.83[ASN][1000 genomes]
rs72621702	0.90[ASN][1000 genomes]
rs7563607	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7593593	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs877200	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs925410	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17241973	LY75	cis	Esophagus Mucosa	GTEx

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160916800-160919600	Active TSS	Fetal Kidney	kidney
2	chr2:160917400-160919200	Active TSS	NH-A	brain
3	chr2:160917400-160919200	Active TSS	Osteobl	bone
4	chr2:160917400-160919400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:160917800-160919000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
6	chr2:160917800-160919400	Active TSS	Stomach Smooth Muscle	stomach
7	chr2:160917800-160919600	Active TSS	Rectal Smooth Muscle	rectum
8	chr2:160918000-160918800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:160918000-160918800	Enhancers	Fetal Heart	heart
10	chr2:160918000-160919200	Active TSS	HMEC	breast
11	chr2:160918000-160919200	Active TSS	HSMM	muscle
12	chr2:160918000-160919400	Active TSS	Fetal Intestine Small	intestine
13	chr2:160918000-160919400	Bivalent/Poised TSS	Fetal Stomach	stomach
14	chr2:160918000-160919400	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr2:160918000-160919400	Active TSS	HSMMtube	muscle
16	chr2:160918000-160919600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:160918000-160919600	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr2:160918000-160919600	Active TSS	NHDF-Ad	bronchial
19	chr2:160918000-160919800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:160918000-160919800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr2:160918200-160918800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
22	chr2:160918200-160919200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr2:160918200-160919200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:160918200-160919400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:160918200-160919400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:160918200-160919400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:160918200-160919400	Active TSS	Duodenum Mucosa	Duodenum
28	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr2:160918200-160919600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
32	chr2:160918200-160919600	Active TSS	Esophagus	oesophagus
33	chr2:160918200-160919600	Active TSS	Spleen	Spleen
34	chr2:160918200-160919600	Active TSS	A549	lung
35	chr2:160918200-160919600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
36	chr2:160918200-160919600	Active TSS	NHLF	lung
37	chr2:160918200-160919800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr2:160918200-160919800	Active TSS	H9 Cell Line	embryonic stem cell
39	chr2:160918200-160919800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
40	chr2:160918200-160919800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr2:160918200-160919800	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr2:160918200-160919800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr2:160918200-160919800	Active TSS	Aorta	Aorta
44	chr2:160918200-160919800	Active TSS	Brain Angular Gyrus	brain
45	chr2:160918200-160919800	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr2:160918200-160919800	Active TSS	Ovary	ovary
47	chr2:160918200-160920000	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr2:160918400-160918800	Bivalent/Poised TSS	Primary T helper cells fromperipheralblood	blood
49	chr2:160918400-160918800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:160918400-160918800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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