The 2.0 version of rSNPBase

Variant report

Variant rs12987602
Chromosome Location chr2:160960788-160960789
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:26 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:160950800-160967000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr2:160953200-160970800 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr2:160954600-160970800 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr2:160954600-160993000 Weak transcription Duodenum Mucosa Duodenum
5 chr2:160954800-160963800 Weak transcription Fetal Intestine Large intestine
6 chr2:160954800-160966200 Weak transcription Fetal Intestine Small intestine
7 chr2:160955400-160965000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr2:160955800-160968800 Weak transcription Fetal Muscle Trunk muscle
9 chr2:160956200-160965600 Strong transcription HMEC breast
10 chr2:160957000-160970200 Weak transcription Pancreas Pancrea
11 chr2:160957400-160981200 Weak transcription Lung lung
12 chr2:160958400-160965200 Strong transcription NHEK skin
13 chr2:160958600-160961200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr2:160959000-160960800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr2:160959200-160963800 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr2:160959200-161004200 Weak transcription Gastric stomach
17 chr2:160959400-160962800 Weak transcription Placenta Amnion Placenta Amnion
18 chr2:160959400-160985200 Weak transcription Esophagus oesophagus
19 chr2:160959400-161032800 Weak transcription Psoas Muscle Psoas
20 chr2:160959800-160960800 Strong transcription HSMM muscle
21 chr2:160959800-160965800 Strong transcription Breast Myoepithelial Primary Cells Breast
22 chr2:160960000-160966400 Weak transcription HSMMtube muscle
23 chr2:160960200-160960800 Strong transcription Skeletal Muscle Female skeletal muscle
24 chr2:160960400-160960800 Bivalent Enhancer GM12878-XiMat blood
25 chr2:160960400-160965600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr2:160960600-160961000 Strong transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015