Variant report

Variant	rs6744567
Chromosome Location	chr2:160933781-160933782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160902576..160905103-chr2:160933519..160935962,2	MCF-7	breast:
2	chr2:160929802..160931814-chr2:160933151..160935876,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10497209	0.83[AFR][1000 genomes]
rs10497210	0.83[AFR][1000 genomes]
rs10497213	0.98[ASN][1000 genomes]
rs10929965	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10929966	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12987602	0.98[ASN][1000 genomes]
rs1511218	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16844715	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17216980	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17241792	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17241973	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17341301	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17831161	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17831191	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17831251	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17831329	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1870102	0.81[AFR][1000 genomes]
rs2124969	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2175416	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2305819	0.82[ASN][1000 genomes]
rs34248629	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3749119	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4233681	0.98[ASN][1000 genomes]
rs4292050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4363984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4520993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4520994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4637057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4664308	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4665147	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4665148	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56040145	0.83[AFR][1000 genomes]
rs56172865	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56293836	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56296079	0.83[AFR][1000 genomes]
rs56297666	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58354887	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59019419	0.85[AFR][1000 genomes]
rs59541669	0.85[AFR][1000 genomes]
rs60908067	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62175384	0.83[AFR][1000 genomes]
rs62175388	0.83[AFR][1000 genomes]
rs62175391	0.83[AFR][1000 genomes]
rs62175396	0.83[AFR][1000 genomes]
rs62175515	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62175517	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62175552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62175559	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62177860	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62177891	0.81[ASN][1000 genomes]
rs6707388	0.97[ASN][1000 genomes]
rs6707458	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6719686	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6728154	0.84[ASN][1000 genomes]
rs6731260	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6739867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6759836	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6759924	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72621702	0.85[ASN][1000 genomes]
rs72979963	0.83[AFR][1000 genomes]
rs72982036	0.83[AFR][1000 genomes]
rs72982044	0.83[AFR][1000 genomes]
rs7563607	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7567781	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7586751	0.83[AFR][1000 genomes]
rs7593593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877200	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs925410	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs983916	0.83[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6744567	LY75	cis	Esophagus Mucosa	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160927200-160934600	Weak transcription	Placenta	Placenta
2	chr2:160929200-160936200	Enhancers	Fetal Intestine Small	intestine
3	chr2:160929400-160936200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr2:160929400-160940200	Weak transcription	Right Atrium	heart
5	chr2:160929800-160934400	Enhancers	Fetal Intestine Large	intestine
6	chr2:160930200-160934600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:160931200-160934400	Enhancers	HUVEC	blood vessel
8	chr2:160931600-160933800	Enhancers	Spleen	Spleen
9	chr2:160932000-160933800	Enhancers	Pancreas	Pancrea
10	chr2:160932400-160934400	Weak transcription	HMEC	breast
11	chr2:160932400-160934600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:160932600-160934200	Enhancers	Primary hematopoietic stem cells	blood
13	chr2:160932600-160934200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:160932800-160933800	Enhancers	Adipose Nuclei	Adipose
15	chr2:160932800-160934000	Enhancers	Primary T cells from cord blood	blood
16	chr2:160932800-160934000	Enhancers	Gastric	stomach
17	chr2:160932800-160934000	Flanking Active TSS	Dnd41	blood
18	chr2:160932800-160934200	Enhancers	Fetal Thymus	thymus
19	chr2:160932800-160934200	Bivalent Enhancer	Stomach Mucosa	stomach
20	chr2:160933000-160934000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr2:160933000-160934600	Enhancers	Fetal Kidney	kidney
22	chr2:160933200-160933800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:160933200-160934000	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr2:160933200-160934400	Enhancers	Colonic Mucosa	Colon
25	chr2:160933400-160933800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr2:160933400-160934200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:160933600-160933800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr2:160933600-160933800	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr2:160933600-160933800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr2:160933600-160933800	Enhancers	Small Intestine	intestine
31	chr2:160933600-160934000	Enhancers	Thymus	Thymus
32	chr2:160933600-160934800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:160933600-160934800	Enhancers	Esophagus	oesophagus

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