Variant report

Variant	rs6707388
Chromosome Location	chr2:160949501-160949502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160947997..160950748-chr2:160956383..160959189,2	MCF-7	breast:
2	chr2:160947091..160949558-chr2:161085857..161088575,2	MCF-7	breast:
3	chr2:160833268..160836077-chr2:160947989..160949879,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10497213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10929965	0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10929966	0.81[ASN][1000 genomes]
rs12987602	0.99[ASN][1000 genomes]
rs13001911	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1511218	0.81[ASN][1000 genomes]
rs16844848	0.93[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs16844863	0.93[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs16844866	0.86[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs16844875	0.84[JPT][hapmap]
rs17216980	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17218566	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs17241282	0.85[JPT][hapmap]
rs17241792	0.85[ASN][1000 genomes]
rs17241973	0.87[ASN][1000 genomes]
rs17341301	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs17830904	0.85[JPT][hapmap]
rs17831161	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17831191	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs17831251	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs17831329	0.87[ASN][1000 genomes]
rs2124969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2175416	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2198918	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2305818	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2305819	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34248629	0.81[ASN][1000 genomes]
rs3749117	0.85[JPT][hapmap]
rs3749119	0.80[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs3792192	0.85[JPT][hapmap]
rs4233681	0.99[ASN][1000 genomes]
rs4292050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4363984	0.98[ASN][1000 genomes]
rs4520993	0.99[ASN][1000 genomes]
rs4520994	0.99[ASN][1000 genomes]
rs4637057	0.99[ASN][1000 genomes]
rs4664308	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4665138	0.85[JPT][hapmap]
rs4665140	0.86[JPT][hapmap]
rs4665141	0.86[JPT][hapmap]
rs4665147	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4665148	0.87[ASN][1000 genomes]
rs4665161	0.93[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4665162	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs56172865	0.95[ASN][1000 genomes]
rs56293836	0.82[ASN][1000 genomes]
rs58354887	0.93[ASN][1000 genomes]
rs62175515	0.81[ASN][1000 genomes]
rs62175517	0.82[ASN][1000 genomes]
rs62175552	0.99[ASN][1000 genomes]
rs62175559	0.99[ASN][1000 genomes]
rs62177860	0.99[ASN][1000 genomes]
rs62177891	0.83[ASN][1000 genomes]
rs6705574	0.90[JPT][hapmap]
rs6707458	0.94[JPT][hapmap]
rs6719686	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6722275	0.85[JPT][hapmap]
rs6728154	0.87[ASN][1000 genomes]
rs6731260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6732107	0.93[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6739867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6744567	0.97[ASN][1000 genomes]
rs6759836	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6759924	0.81[JPT][hapmap]
rs72621702	0.84[ASN][1000 genomes]
rs7563607	0.83[ASN][1000 genomes]
rs7567781	0.82[ASN][1000 genomes]
rs7593593	0.97[ASN][1000 genomes]
rs877200	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs925410	0.94[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160947400-160949600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:160947400-160949600	Enhancers	HMEC	breast
3	chr2:160948200-160949800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:160948600-160959800	Weak transcription	HSMM	muscle
5	chr2:160949400-160950400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:160949400-160952600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links