Variant report

Variant	rs1511218
Chromosome Location	chr2:160906390-160906391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160903409..160905780-chr2:160905886..160908063,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10497213	0.82[ASN][1000 genomes]
rs10929965	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10929966	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987602	0.82[ASN][1000 genomes]
rs16844715	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17216980	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17241282	0.80[ASN][1000 genomes]
rs17241792	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17241973	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17341301	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17830755	0.80[ASN][1000 genomes]
rs17830904	0.82[ASN][1000 genomes]
rs17831161	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17831191	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17831251	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17831329	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2124969	0.87[AMR][1000 genomes]
rs2175416	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34248629	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749119	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3792192	0.80[ASN][1000 genomes]
rs4233681	0.82[ASN][1000 genomes]
rs4292050	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4363984	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4520993	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4520994	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4637057	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4664308	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4665138	0.80[ASN][1000 genomes]
rs4665140	0.80[ASN][1000 genomes]
rs4665141	0.80[ASN][1000 genomes]
rs4665147	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4665148	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56172865	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56293836	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56297666	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58354887	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62175487	0.82[ASN][1000 genomes]
rs62175488	0.82[ASN][1000 genomes]
rs62175515	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175517	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62175552	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62175559	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62177860	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66484345	0.82[ASN][1000 genomes]
rs66667042	0.80[ASN][1000 genomes]
rs6705574	0.88[ASN][1000 genomes]
rs6707388	0.81[ASN][1000 genomes]
rs6707458	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6719686	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722275	0.82[ASN][1000 genomes]
rs6731260	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6739867	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6744567	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6759836	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6759924	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72621699	0.95[ASN][1000 genomes]
rs72621702	0.88[ASN][1000 genomes]
rs7563607	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7567781	0.81[AMR][1000 genomes]
rs7593593	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs877200	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925410	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1511218	LY75	cis	Esophagus Mucosa	GTEx

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160828600-160907200	Weak transcription	Small Intestine	intestine
2	chr2:160879400-160908000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:160879800-160907800	Weak transcription	NHEK	skin
4	chr2:160881200-160912000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:160881200-160913400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:160884000-160911600	Weak transcription	Fetal Kidney	kidney
7	chr2:160890600-160907800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:160895200-160911600	Weak transcription	HMEC	breast
9	chr2:160896200-160907800	Weak transcription	Colonic Mucosa	Colon
10	chr2:160896400-160907800	Weak transcription	Aorta	Aorta
11	chr2:160896800-160908600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:160897000-160907800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:160897600-160907000	Weak transcription	Colon Smooth Muscle	Colon
14	chr2:160897600-160907400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:160897600-160907600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:160899000-160907600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:160899200-160907800	Weak transcription	NHDF-Ad	bronchial
18	chr2:160899800-160907600	Weak transcription	HUVEC	blood vessel
19	chr2:160900000-160907800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:160900200-160907800	Weak transcription	NH-A	brain
21	chr2:160900200-160908000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:160900400-160907800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:160900400-160908000	Weak transcription	HSMMtube	muscle
24	chr2:160900600-160907800	Weak transcription	Fetal Stomach	stomach
25	chr2:160901400-160911800	Weak transcription	Adipose Nuclei	Adipose
26	chr2:160901600-160906800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:160901600-160907800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:160901600-160907800	Weak transcription	Ovary	ovary
29	chr2:160901600-160908000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr2:160901600-160911600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:160902200-160907200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:160902200-160908000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:160902200-160908200	Weak transcription	Fetal Intestine Large	intestine
34	chr2:160902400-160908000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:160902800-160907200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr2:160903000-160913400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:160903200-160906400	Weak transcription	Fetal Intestine Small	intestine
38	chr2:160903800-160911600	Weak transcription	Esophagus	oesophagus

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