Variant report

Variant	rs7567781
Chromosome Location	chr2:160999537-160999538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160997618..161000119-chr2:161002297..161003869,2	MCF-7	breast:
2	chr2:160997062..160999873-chr2:161011563..161014295,2	MCF-7	breast:
3	chr2:160997193..161000864-chr2:161081939..161085480,4	MCF-7	breast:
4	chr2:160998766..161001076-chr2:161004659..161006213,2	K562	blood:
5	chr2:160992962..160997280-chr2:160998915..161002711,4	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10497213	0.83[ASN][1000 genomes]
rs10929965	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10929966	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12987602	0.83[ASN][1000 genomes]
rs13001911	0.83[ASN][1000 genomes]
rs1511218	0.81[AMR][1000 genomes]
rs16844848	0.81[ASN][1000 genomes]
rs17216980	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17218566	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17241792	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17831161	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17831191	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17831251	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17831329	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1870102	0.85[EUR][1000 genomes]
rs1870104	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2124969	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175416	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2198918	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2305818	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2305819	0.95[ASN][1000 genomes]
rs34248629	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4233681	0.83[ASN][1000 genomes]
rs4292050	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4363984	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4520993	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4520994	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4637057	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4664308	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4664317	0.89[ASN][1000 genomes]
rs4665147	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4665148	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4665162	0.87[EUR][1000 genomes]
rs55959207	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56293836	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs56297666	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs58354887	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59019419	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs59541669	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60908067	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62175395	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62175515	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs62175517	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs62175552	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62175559	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62177860	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62177891	0.88[ASN][1000 genomes]
rs6707388	0.82[ASN][1000 genomes]
rs6707458	0.82[AMR][1000 genomes]
rs6719686	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6722950	0.88[ASN][1000 genomes]
rs6728154	0.94[ASN][1000 genomes]
rs6731260	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6739867	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6744567	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6759836	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6759924	0.84[AFR][1000 genomes]
rs72623108	0.83[ASN][1000 genomes]
rs7563607	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7589820	0.91[EUR][1000 genomes]
rs7593593	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7595859	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs877200	0.82[AMR][1000 genomes]
rs925410	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459929	chr2:160963603-161079435	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv583497	chr2:160963603-161079435	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875346	chr2:160965335-161044155	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1001502	chr2:160967864-161079450	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv528083	chr2:160998792-161015066	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7567781	LY75	cis	Esophagus Mucosa	GTEx

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160959200-161004200	Weak transcription	Gastric	stomach
2	chr2:160959400-161032800	Weak transcription	Psoas Muscle	Psoas
3	chr2:160983200-161005200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:160990000-161005000	Weak transcription	Colonic Mucosa	Colon
5	chr2:160993200-161002200	Weak transcription	Lung	lung
6	chr2:160994400-161002000	Weak transcription	Esophagus	oesophagus
7	chr2:160994400-161002000	Weak transcription	Fetal Intestine Large	intestine
8	chr2:160994400-161004200	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:160994400-161014800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr2:160994400-161037400	Weak transcription	Pancreas	Pancrea
11	chr2:160994600-161038000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:160994800-161001000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:160994800-161002000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:160997200-160999600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:160997200-161002000	Weak transcription	Fetal Intestine Small	intestine
16	chr2:160997200-161014600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:160997200-161021800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:160997600-161001000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:160998000-160999800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:160998600-161001000	Genic enhancers	HMEC	breast
21	chr2:160998800-161000600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:160998800-161000800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:160998800-161000800	Genic enhancers	NHEK	skin
24	chr2:160999000-160999800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:160999000-161000400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:160999000-161001200	Weak transcription	HSMMtube	muscle
27	chr2:160999200-161001200	Weak transcription	Fetal Kidney	kidney
28	chr2:160999400-161000800	Weak transcription	HSMM	muscle
29	chr2:160999400-161004800	Weak transcription	A549	lung
30	chr2:160999400-161012800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:160999400-161022600	Weak transcription	Stomach Mucosa	stomach

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