Variant report

Variant	rs67086747
Chromosome Location	chr8:125342697-125342698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125337424..125341244-chr8:125341867..125344494,3	K562	blood:
2	chr8:125326091..125328342-chr8:125340650..125343149,2	MCF-7	breast:
3	chr8:125342566..125344974-chr8:125348992..125350712,2	K562	blood:
4	chr8:125338867..125341244-chr8:125341867..125344052,2	K562	blood:
5	chr8:125340663..125343070-chr8:125358970..125360934,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10090489	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093809	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10093812	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096657	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10105192	0.82[EUR][1000 genomes]
rs16899562	0.94[AFR][1000 genomes]
rs16899577	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17297352	0.85[EUR][1000 genomes]
rs17369737	0.86[EUR][1000 genomes]
rs17369758	0.86[EUR][1000 genomes]
rs17369882	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28460280	0.86[EUR][1000 genomes]
rs28485247	0.90[ASN][1000 genomes]
rs28536158	0.86[EUR][1000 genomes]
rs28538795	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28562339	0.86[EUR][1000 genomes]
rs28589797	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28594441	0.86[EUR][1000 genomes]
rs28657471	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28694575	0.94[AFR][1000 genomes]
rs28827823	0.86[EUR][1000 genomes]
rs4316136	1.00[ASN][1000 genomes]
rs4355753	0.94[AFR][1000 genomes]
rs4406374	0.83[EUR][1000 genomes]
rs55931807	0.83[EUR][1000 genomes]
rs56036293	0.82[EUR][1000 genomes]
rs56142132	0.82[EUR][1000 genomes]
rs56166945	0.83[EUR][1000 genomes]
rs56202566	0.83[EUR][1000 genomes]
rs56225520	0.94[AFR][1000 genomes]
rs56893629	0.83[EUR][1000 genomes]
rs58908685	0.83[EUR][1000 genomes]
rs66538719	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66579093	0.90[ASN][1000 genomes]
rs6990592	1.00[ASN][1000 genomes]
rs6990925	1.00[ASN][1000 genomes]
rs7015493	0.83[EUR][1000 genomes]
rs72711162	1.00[ASN][1000 genomes]
rs72721427	0.99[ASN][1000 genomes]
rs72721429	0.99[ASN][1000 genomes]
rs72721430	1.00[ASN][1000 genomes]
rs72721432	1.00[ASN][1000 genomes]
rs72721435	1.00[ASN][1000 genomes]
rs72721437	1.00[ASN][1000 genomes]
rs72721440	0.98[ASN][1000 genomes]
rs72721441	1.00[ASN][1000 genomes]
rs72721443	1.00[ASN][1000 genomes]
rs73332159	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73332190	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73332191	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73333910	0.86[EUR][1000 genomes]
rs73333911	0.86[EUR][1000 genomes]
rs73333937	0.83[EUR][1000 genomes]
rs73333990	0.82[EUR][1000 genomes]
rs73333993	0.82[EUR][1000 genomes]
rs73333994	0.82[EUR][1000 genomes]
rs73336155	0.82[EUR][1000 genomes]
rs73336165	0.82[EUR][1000 genomes]
rs73336173	0.82[EUR][1000 genomes]
rs73336179	0.82[EUR][1000 genomes]
rs73336181	0.82[EUR][1000 genomes]
rs73336185	0.82[EUR][1000 genomes]
rs73336202	0.82[EUR][1000 genomes]
rs73337903	0.82[EUR][1000 genomes]
rs73337904	0.82[EUR][1000 genomes]
rs7819589	0.82[EUR][1000 genomes]
rs7833150	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835963	0.82[EUR][1000 genomes]
rs7836478	0.82[EUR][1000 genomes]
rs9886564	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv521356	chr8:125309055-125404763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv516190	chr8:125323011-125343441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv527751	chr8:125338216-125431030	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125312600-125346000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:125332000-125352800	Weak transcription	Fetal Lung	lung
3	chr8:125332400-125351000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:125332600-125348000	Weak transcription	Primary B cells from cord blood	blood
5	chr8:125332800-125346000	Weak transcription	Hela-S3	cervix
6	chr8:125333800-125345800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:125334000-125345800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:125334000-125345800	Weak transcription	HMEC	breast
9	chr8:125334200-125343000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:125334200-125364000	Weak transcription	HUVEC	blood vessel
11	chr8:125336800-125347200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:125338000-125345600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:125338000-125347400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:125338400-125346000	Weak transcription	A549	lung
15	chr8:125339200-125343000	Weak transcription	Fetal Heart	heart
16	chr8:125339200-125343200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:125339200-125344400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:125339200-125347000	Weak transcription	Primary T cells from cord blood	blood
19	chr8:125339400-125344600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr8:125340000-125346000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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