Variant report

Variant	rs10096657
Chromosome Location	chr8:125357041-125357042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125349010..125350825-chr8:125354672..125357110,2	MCF-7	breast:
2	chr8:125353704..125355913-chr8:125356266..125359505,3	MCF-7	breast:
3	chr8:125343485..125345851-chr8:125355810..125358693,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10090489	0.94[AFR][1000 genomes]
rs10091430	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10093809	0.94[AFR][1000 genomes]
rs10093812	0.94[AFR][1000 genomes]
rs10105192	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10111787	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10956175	0.91[ASN][1000 genomes]
rs11997689	0.88[ASN][1000 genomes]
rs12680422	0.97[ASN][1000 genomes]
rs12680423	0.97[ASN][1000 genomes]
rs16899562	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16899577	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369882	0.85[EUR][1000 genomes]
rs28456315	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460280	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28536158	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538795	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562339	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589797	0.85[EUR][1000 genomes]
rs28594441	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657471	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28694575	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28716042	0.88[ASN][1000 genomes]
rs28721926	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28827823	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128778	0.97[ASN][1000 genomes]
rs4128779	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4257989	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4355753	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364615	0.87[ASN][1000 genomes]
rs4366066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4368958	0.97[ASN][1000 genomes]
rs4376483	0.97[ASN][1000 genomes]
rs4394374	0.91[ASN][1000 genomes]
rs4406374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4503079	0.97[ASN][1000 genomes]
rs4617135	0.91[ASN][1000 genomes]
rs55679493	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55931807	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56036293	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56142132	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56166945	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56202566	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56225520	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56342262	0.80[ASN][1000 genomes]
rs56893629	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58908685	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66538719	0.85[EUR][1000 genomes]
rs67086747	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6984676	0.86[ASN][1000 genomes]
rs6984691	0.86[ASN][1000 genomes]
rs6990925	1.00[MEX][hapmap]
rs7005950	0.97[ASN][1000 genomes]
rs7015493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73332159	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73332190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73332191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73333910	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73333911	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73333937	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73333948	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73333990	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73333993	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73333994	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73336155	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73336165	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73336173	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73336179	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73336181	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73336185	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73336195	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73336202	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73337903	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73337904	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73337971	0.82[EUR][1000 genomes]
rs7386980	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7387197	0.82[ASN][1000 genomes]
rs7388185	0.97[ASN][1000 genomes]
rs7462023	0.85[EUR][1000 genomes]
rs7819589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7835963	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7836478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9886564	0.87[ASW][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv521356	chr8:125309055-125404763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv527751	chr8:125338216-125431030	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	esv3384288	chr8:125350820-125377284	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125334200-125364000	Weak transcription	HUVEC	blood vessel
2	chr8:125346400-125361000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr8:125346400-125368200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:125352000-125366400	Weak transcription	Primary T cells from cord blood	blood
5	chr8:125352200-125357200	Weak transcription	Right Ventricle	heart
6	chr8:125352600-125358400	Enhancers	Fetal Heart	heart
7	chr8:125353000-125376200	Weak transcription	HSMM	muscle
8	chr8:125353200-125364200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr8:125353200-125364800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:125353600-125357600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:125354000-125357800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:125354600-125361000	Weak transcription	A549	lung
13	chr8:125354600-125362200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:125354600-125365000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:125355200-125361000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:125355200-125361000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:125355400-125364000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:125355600-125360800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:125355800-125370400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:125356000-125357200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr8:125356000-125357400	Weak transcription	Left Ventricle	heart
22	chr8:125356000-125358200	Weak transcription	Psoas Muscle	Psoas
23	chr8:125356000-125362400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr8:125356400-125357600	Enhancers	HSMMtube	muscle
25	chr8:125356400-125362800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr8:125356400-125363800	Weak transcription	Fetal Lung	lung
27	chr8:125356600-125358400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr8:125356800-125361000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr8:125357000-125357400	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:125357000-125357800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr8:125357000-125363600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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