Variant report

Variant	rs73337971
Chromosome Location	chr8:125432302-125432303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125430987..125433174-chr8:125436627..125439143,3	MCF-7	breast:
2	chr8:125429633..125432443-chr8:125437672..125439432,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10096657	0.82[EUR][1000 genomes]
rs10105192	0.87[EUR][1000 genomes]
rs16899577	0.82[EUR][1000 genomes]
rs17297352	0.84[EUR][1000 genomes]
rs17369737	0.82[EUR][1000 genomes]
rs17369758	0.82[EUR][1000 genomes]
rs28460280	0.82[EUR][1000 genomes]
rs28536158	0.82[EUR][1000 genomes]
rs28538795	0.82[EUR][1000 genomes]
rs28562339	0.82[EUR][1000 genomes]
rs28594441	0.82[EUR][1000 genomes]
rs28827823	0.82[EUR][1000 genomes]
rs4406374	0.85[EUR][1000 genomes]
rs55931807	0.86[EUR][1000 genomes]
rs56036293	0.87[EUR][1000 genomes]
rs56142132	0.87[EUR][1000 genomes]
rs56166945	0.85[EUR][1000 genomes]
rs56202566	0.85[EUR][1000 genomes]
rs56893629	0.85[EUR][1000 genomes]
rs58908685	0.85[EUR][1000 genomes]
rs7015493	0.82[EUR][1000 genomes]
rs73332159	0.82[EUR][1000 genomes]
rs73332190	0.82[EUR][1000 genomes]
rs73332191	0.82[EUR][1000 genomes]
rs73333910	0.82[EUR][1000 genomes]
rs73333911	0.82[EUR][1000 genomes]
rs73333937	0.85[EUR][1000 genomes]
rs73333990	0.87[EUR][1000 genomes]
rs73333993	0.87[EUR][1000 genomes]
rs73333994	0.87[EUR][1000 genomes]
rs73336155	0.87[EUR][1000 genomes]
rs73336165	0.87[EUR][1000 genomes]
rs73336173	0.87[EUR][1000 genomes]
rs73336179	0.87[EUR][1000 genomes]
rs73336181	0.87[EUR][1000 genomes]
rs73336185	0.87[EUR][1000 genomes]
rs73336202	0.87[EUR][1000 genomes]
rs73337903	0.87[EUR][1000 genomes]
rs73337904	0.87[EUR][1000 genomes]
rs7819589	0.87[EUR][1000 genomes]
rs7835963	0.87[EUR][1000 genomes]
rs7836478	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	esv275091	chr8:125430760-125437615	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv891430	chr8:125431030-125485027	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125427200-125433800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:125430600-125437800	Weak transcription	Left Ventricle	heart
3	chr8:125431000-125434400	Weak transcription	Fetal Heart	heart
4	chr8:125432200-125432400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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