Variant report

Variant	rs56202566
Chromosome Location	chr8:125413613-125413614
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125382316..125385795-chr8:125410414..125414500,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164983	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10091430	0.94[ASN][1000 genomes]
rs10096657	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10105192	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111787	0.94[ASN][1000 genomes]
rs10956175	1.00[ASN][1000 genomes]
rs11997689	0.97[ASN][1000 genomes]
rs12680422	0.94[ASN][1000 genomes]
rs12680423	0.94[ASN][1000 genomes]
rs16899562	0.91[ASN][1000 genomes]
rs16899577	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17297352	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17369737	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17369758	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17369882	0.82[EUR][1000 genomes]
rs28456315	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28460280	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28536158	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28538795	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28562339	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28589797	0.82[EUR][1000 genomes]
rs28594441	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28657471	0.83[EUR][1000 genomes]
rs28694575	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28716042	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28721926	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28827823	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4128778	0.94[ASN][1000 genomes]
rs4128779	0.94[ASN][1000 genomes]
rs4257989	0.94[ASN][1000 genomes]
rs4355753	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4364615	0.84[ASN][1000 genomes]
rs4366066	0.94[ASN][1000 genomes]
rs4368958	0.94[ASN][1000 genomes]
rs4376483	0.94[ASN][1000 genomes]
rs4394374	1.00[ASN][1000 genomes]
rs4406374	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4503079	0.94[ASN][1000 genomes]
rs4617135	1.00[ASN][1000 genomes]
rs55679493	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55931807	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56036293	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142132	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56225520	0.91[ASN][1000 genomes]
rs56893629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58908685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66538719	0.82[EUR][1000 genomes]
rs67086747	0.83[EUR][1000 genomes]
rs7005950	0.94[ASN][1000 genomes]
rs7015493	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73332159	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73332190	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73332191	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73333910	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73333911	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73333937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73333948	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73333990	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73333993	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73333994	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73336155	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73336165	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73336173	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73336179	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73336181	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73336185	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73336195	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73336202	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337903	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337904	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337905	0.97[AFR][1000 genomes]
rs73337971	0.85[EUR][1000 genomes]
rs7386980	0.94[ASN][1000 genomes]
rs7387197	0.90[ASN][1000 genomes]
rs7388185	0.94[ASN][1000 genomes]
rs7462023	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7819589	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835963	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836478	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv527751	chr8:125338216-125431030	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125409800-125415200	Weak transcription	Fetal Heart	heart

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