Variant report

Variant	rs675779
Chromosome Location	chr3:101599019-101599020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101566748..101570087-chr3:101596631..101600244,5	MCF-7	breast:
2	chr3:101587884..101589425-chr3:101596987..101599237,2	K562	blood:

Variant related genes	Relation type
ENSG00000144802	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1081574	0.92[ASN][1000 genomes]
rs1081576	0.92[ASN][1000 genomes]
rs1088047	0.92[ASN][1000 genomes]
rs1091320	0.91[ASN][1000 genomes]
rs1091664	0.97[ASN][1000 genomes]
rs1378838	0.92[ASN][1000 genomes]
rs1513118	0.83[ASN][1000 genomes]
rs1672380	0.92[ASN][1000 genomes]
rs1672386	0.93[ASN][1000 genomes]
rs1707608	0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1707613	0.92[ASN][1000 genomes]
rs1707618	0.89[ASN][1000 genomes]
rs1707619	0.93[ASN][1000 genomes]
rs2860329	0.92[ASN][1000 genomes]
rs2925323	0.86[ASN][1000 genomes]
rs2925325	0.93[ASN][1000 genomes]
rs2925326	0.93[ASN][1000 genomes]
rs2926538	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2929922	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs617688	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs641432	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs647556	1.00[CEU][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs650567	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs651907	0.86[ASN][1000 genomes]
rs654102	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs662792	0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs665211	0.87[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs694936	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs771324	0.93[ASN][1000 genomes]
rs771573	0.97[ASN][1000 genomes]
rs771574	0.97[ASN][1000 genomes]
rs771575	0.97[ASN][1000 genomes]
rs771578	0.83[ASN][1000 genomes]
rs796410	0.80[ASN][1000 genomes]
rs797776	0.81[ASN][1000 genomes]
rs797866	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs9869373	0.85[ASN][1000 genomes]
rs9881690	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101590200-101600800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:101597400-101607000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:101598000-101599200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:101598000-101599600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr3:101598000-101599800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:101598000-101599800	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:101598000-101599800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:101598000-101600000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:101598200-101599800	Enhancers	Primary B cells from cord blood	blood
10	chr3:101598400-101599800	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:101598600-101599200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:101598600-101603000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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