Variant report

Variant	rs771573
Chromosome Location	chr3:101620896-101620897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101611977..101614577-chr3:101618423..101621104,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1081574	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1081576	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1088047	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1091320	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1091664	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378838	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1513118	0.87[ASN][1000 genomes]
rs1672380	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1672386	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1707608	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1707613	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1707618	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1707619	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2860329	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2925323	0.89[ASN][1000 genomes]
rs2925325	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2925326	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs650567	0.83[JPT][hapmap]
rs651907	0.84[ASN][1000 genomes]
rs654102	0.97[ASN][1000 genomes]
rs662792	0.86[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs665211	0.86[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs675779	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs771324	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs771574	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771575	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771578	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs796410	0.81[ASN][1000 genomes]
rs797776	0.81[ASN][1000 genomes]
rs797866	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9834402	0.81[EUR][1000 genomes]
rs9869373	0.88[ASN][1000 genomes]
rs9881690	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101617000-101621000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:101619000-101621800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr3:101619200-101623000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:101619800-101621600	Enhancers	GM12878-XiMat	blood
5	chr3:101619800-101622600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:101620200-101621600	Enhancers	Primary B cells from cord blood	blood
7	chr3:101620200-101621800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:101620400-101621600	Enhancers	HUVEC	blood vessel
9	chr3:101620600-101621000	Enhancers	Colon Smooth Muscle	Colon
10	chr3:101620600-101621600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:101620600-101621600	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:101620600-101621600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:101620600-101622600	Enhancers	HSMM	muscle
14	chr3:101620600-101622600	Enhancers	NHLF	lung
15	chr3:101620600-101622800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:101620600-101622800	Enhancers	NHEK	skin
17	chr3:101620600-101623000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:101620600-101623000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:101620800-101621000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:101620800-101621200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:101620800-101621200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr3:101620800-101621200	Enhancers	A549	lung
23	chr3:101620800-101621600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:101620800-101621800	Enhancers	Placenta	Placenta
25	chr3:101620800-101622600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:101620800-101622600	Enhancers	HMEC	breast
27	chr3:101620800-101622600	Enhancers	NH-A	brain
28	chr3:101620800-101622800	Enhancers	NHDF-Ad	bronchial
29	chr3:101620800-101623000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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