Variant report

Variant	rs771324
Chromosome Location	chr3:101610365-101610366
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101609413..101611144-chr3:101614360..101616706,2	MCF-7	breast:
2	chr3:101604292..101607119-chr3:101609303..101612287,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1081574	0.88[ASN][1000 genomes]
rs1081576	0.88[ASN][1000 genomes]
rs1088047	0.88[ASN][1000 genomes]
rs1091320	0.87[ASN][1000 genomes]
rs1091664	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1378838	0.87[ASN][1000 genomes]
rs1672380	0.87[ASN][1000 genomes]
rs1672386	0.88[ASN][1000 genomes]
rs1707608	0.83[ASN][1000 genomes]
rs1707613	0.87[ASN][1000 genomes]
rs1707618	0.84[ASN][1000 genomes]
rs1707619	0.88[ASN][1000 genomes]
rs2860329	0.87[ASN][1000 genomes]
rs2925323	0.81[ASN][1000 genomes]
rs2925325	0.88[ASN][1000 genomes]
rs2925326	0.88[ASN][1000 genomes]
rs654102	0.93[ASN][1000 genomes]
rs675779	0.93[ASN][1000 genomes]
rs771573	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs771574	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs771575	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs771578	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs797866	0.83[ASN][1000 genomes]
rs9834402	0.81[EUR][1000 genomes]
rs9869373	0.80[ASN][1000 genomes]
rs9881690	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3436195	chr3:101608162-101612460	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101607800-101614600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:101608000-101611000	Weak transcription	Aorta	Aorta
3	chr3:101609200-101610400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:101609200-101611000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:101609600-101611000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:101609800-101611400	Weak transcription	Liver	Liver
7	chr3:101610200-101610600	Weak transcription	HUVEC	blood vessel

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