Variant report
| Variant | rs771578 |
|---|---|
| Chromosome Location | chr3:101613434-101613435 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:101601882..101603837-chr3:101610958..101613952,2 | MCF-7 | breast: | |
| 2 | chr3:101612357..101614518-chr3:101615231..101617299,2 | K562 | blood: | |
| 3 | chr3:101570052..101571665-chr3:101611707..101614656,2 | MCF-7 | breast: | |
| 4 | chr3:101611977..101614577-chr3:101618423..101621104,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1081574 | 0.87[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1081576 | 0.87[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1088047 | 0.87[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1091320 | 0.84[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1091664 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1378838 | 0.87[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1672380 | 0.87[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1672386 | 0.87[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1707613 | 0.87[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1707618 | 0.84[AFR][1000 genomes] |
| rs1707619 | 0.87[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2860329 | 0.87[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2925325 | 0.84[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2925326 | 0.84[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs650567 | 0.83[ASN][1000 genomes] |
| rs654102 | 0.83[ASN][1000 genomes] |
| rs675779 | 0.83[ASN][1000 genomes] |
| rs771324 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs771573 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs771574 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs771575 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9834402 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv497784 | chr3:101315009-102092989 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 2 | esv3351469 | chr3:101511702-101866448 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 3 | nsv1010762 | chr3:101584836-101803821 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:101607800-101614600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
