Variant report

Variant	rs771575
Chromosome Location	chr3:101619359-101619360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101618062..101619983-chr3:101666275..101668883,2	K562	blood:
2	chr3:101611977..101614577-chr3:101618423..101621104,2	K562	blood:
3	chr3:101570369..101573097-chr3:101618307..101620488,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1081574	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1081576	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1088047	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1091320	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1091664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378838	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1513118	0.87[ASN][1000 genomes]
rs1672380	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1672386	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1707608	0.90[ASN][1000 genomes]
rs1707613	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1707618	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1707619	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2860329	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2925323	0.89[ASN][1000 genomes]
rs2925325	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2925326	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs651907	0.84[ASN][1000 genomes]
rs654102	0.97[ASN][1000 genomes]
rs662792	0.84[ASN][1000 genomes]
rs665211	0.84[ASN][1000 genomes]
rs675779	0.97[ASN][1000 genomes]
rs771324	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs771573	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771574	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs796410	0.81[ASN][1000 genomes]
rs797776	0.81[ASN][1000 genomes]
rs797866	0.90[ASN][1000 genomes]
rs9834402	0.83[EUR][1000 genomes]
rs9869373	0.88[ASN][1000 genomes]
rs9881690	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101615200-101620800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:101616600-101619400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:101616600-101619800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:101617000-101621000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:101618000-101620600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:101618000-101620800	Weak transcription	NHDF-Ad	bronchial
7	chr3:101619000-101620200	Weak transcription	Primary B cells from cord blood	blood
8	chr3:101619000-101620600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:101619000-101621800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr3:101619200-101619400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:101619200-101619600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:101619200-101619800	Weak transcription	GM12878-XiMat	blood
13	chr3:101619200-101623000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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