Variant report

Variant	rs6771503
Chromosome Location	chr3:119637045-119637046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119636789..119640081-chr3:119811582..119815615,5	MCF-7	breast:
2	chr3:119636239..119640440-chr3:119812716..119815351,4	MCF-7	breast:
3	chr3:119636868..119639651-chr3:119641499..119644055,2	MCF-7	breast:
4	chr3:119636744..119638491-chr3:119642784..119644301,2	MCF-7	breast:
5	chr3:119629935..119635391-chr3:119636173..119640969,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242622	Chromatin interaction
ENSG00000082701	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55695126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55954491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58540702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6804704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854726	0.89[AFR][1000 genomes]
rs73854728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854765	1.00[AMR][1000 genomes]
rs73854767	1.00[AMR][1000 genomes]
rs7626888	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119546000-119663400	Weak transcription	Lung	lung
2	chr3:119597600-119659000	Weak transcription	Gastric	stomach
3	chr3:119608000-119643600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:119608200-119639200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:119608200-119677800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:119611200-119643400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:119611200-119667000	Weak transcription	Pancreas	Pancrea
8	chr3:119611400-119642000	Weak transcription	Fetal Brain Male	brain
9	chr3:119611400-119649400	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:119611400-119682200	Weak transcription	HSMMtube	muscle
11	chr3:119613000-119637400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:119614200-119645200	Weak transcription	K562	blood
13	chr3:119618400-119639800	Weak transcription	NHLF	lung
14	chr3:119621200-119639600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:119621800-119639000	Weak transcription	Fetal Intestine Small	intestine
16	chr3:119622200-119640800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:119624600-119642200	Weak transcription	Brain Germinal Matrix	brain
18	chr3:119625000-119668200	Weak transcription	Hela-S3	cervix
19	chr3:119627800-119640400	Weak transcription	Brain Substantia Nigra	brain
20	chr3:119628200-119638800	Weak transcription	Aorta	Aorta
21	chr3:119628200-119643000	Weak transcription	Ovary	ovary
22	chr3:119628200-119643800	Weak transcription	Left Ventricle	heart
23	chr3:119628200-119655600	Weak transcription	Fetal Heart	heart
24	chr3:119628200-119663200	Weak transcription	Right Atrium	heart
25	chr3:119628400-119651000	Weak transcription	Right Ventricle	heart
26	chr3:119629600-119672200	Weak transcription	Fetal Stomach	stomach
27	chr3:119630200-119645400	Weak transcription	HUVEC	blood vessel
28	chr3:119630400-119639000	Weak transcription	Fetal Brain Female	brain
29	chr3:119630800-119638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:119630800-119663200	Weak transcription	Esophagus	oesophagus
31	chr3:119630800-119697400	Weak transcription	Thymus	Thymus
32	chr3:119631000-119639200	Weak transcription	Fetal Intestine Large	intestine
33	chr3:119631000-119642800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:119631000-119644000	Weak transcription	Psoas Muscle	Psoas
35	chr3:119631000-119717000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:119631200-119638000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:119631200-119639200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:119631200-119647800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:119631200-119650400	Weak transcription	Small Intestine	intestine
40	chr3:119631400-119638000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr3:119631400-119638200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr3:119631400-119638600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:119631400-119642800	Weak transcription	Liver	Liver
44	chr3:119631400-119643000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:119631400-119643200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr3:119631400-119644000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:119631400-119646200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:119631400-119660800	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:119631600-119637800	Weak transcription	Primary T cells from cord blood	blood
50	chr3:119631600-119641600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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