Variant report

Variant	rs73854762
Chromosome Location	chr3:119719418-119719419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119716001..119720864-chr3:119812856..119815469,4	MCF-7	breast:
2	chr3:119717186..119719857-chr3:119810036..119812260,3	K562	blood:

Variant related genes	Relation type
ENSG00000082701	Chromatin interaction
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55695126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55954491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58540702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6771503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6804704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854726	0.89[AFR][1000 genomes]
rs73854728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854765	1.00[AMR][1000 genomes]
rs73854767	1.00[AMR][1000 genomes]
rs7626888	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119681200-119723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:119689000-119722600	Weak transcription	Gastric	stomach
3	chr3:119692400-119723200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:119693600-119732200	Weak transcription	A549	lung
5	chr3:119700600-119722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:119701000-119720000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:119701000-119722600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:119709000-119722600	Weak transcription	Ovary	ovary
9	chr3:119709200-119723000	Weak transcription	Spleen	Spleen
10	chr3:119710200-119722600	Weak transcription	Stomach Mucosa	stomach
11	chr3:119710200-119730800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:119710400-119722800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:119711400-119729200	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:119711800-119722800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:119711800-119723200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:119712000-119723400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:119712000-119732200	Weak transcription	HepG2	liver
18	chr3:119712200-119723400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:119712200-119732400	Weak transcription	NHLF	lung
20	chr3:119712400-119722800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:119712600-119745000	Weak transcription	Hela-S3	cervix
22	chr3:119712800-119722000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:119712800-119722800	Weak transcription	Thymus	Thymus
24	chr3:119712800-119723400	Weak transcription	Osteobl	bone
25	chr3:119712800-119732200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:119713000-119722000	Weak transcription	Psoas Muscle	Psoas
27	chr3:119713000-119722800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:119713200-119744400	Weak transcription	Fetal Kidney	kidney
29	chr3:119713800-119722600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:119714400-119722600	Weak transcription	Brain Angular Gyrus	brain
31	chr3:119714400-119723000	Weak transcription	Fetal Brain Male	brain
32	chr3:119715600-119722800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:119715800-119722600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:119716400-119721000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr3:119716400-119722000	Weak transcription	K562	blood
36	chr3:119716400-119722600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:119716600-119719600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:119716600-119720600	Strong transcription	HMEC	breast
39	chr3:119716600-119721000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:119716600-119721000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:119716800-119720200	Strong transcription	HSMM	muscle
42	chr3:119716800-119720400	Strong transcription	Primary T cells from cord blood	blood
43	chr3:119716800-119721200	Strong transcription	Primary hematopoietic stem cells	blood
44	chr3:119716800-119722000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:119717000-119719600	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr3:119717000-119720000	Strong transcription	Dnd41	blood
47	chr3:119717000-119720200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:119717000-119720400	Strong transcription	NHDF-Ad	bronchial
49	chr3:119717000-119720800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:119717000-119721000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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