Variant report

Variant	rs73854757
Chromosome Location	chr3:119710179-119710180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119710167..119712500-chr3:119810883..119812424,2	MCF-7	breast:
2	chr3:119709355..119712243-chr3:119721755..119723709,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55695126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55954491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58540702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6771503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6804704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854726	0.89[AFR][1000 genomes]
rs73854728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854765	1.00[AMR][1000 genomes]
rs73854767	1.00[AMR][1000 genomes]
rs7626888	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119631000-119717000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:119656600-119718400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:119665800-119716800	Weak transcription	HSMM	muscle
4	chr3:119681200-119723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:119687200-119716600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:119689000-119710600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:119689000-119711800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:119689000-119722600	Weak transcription	Gastric	stomach
9	chr3:119692400-119717000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:119692400-119723200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:119693600-119732200	Weak transcription	A549	lung
12	chr3:119700600-119722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:119700800-119717000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:119701000-119720000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:119701000-119722600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:119701400-119712400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:119701800-119717200	Weak transcription	Fetal Thymus	thymus
18	chr3:119706000-119711000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:119706000-119711400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:119706000-119717000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:119706200-119717000	Weak transcription	Primary B cells from cord blood	blood
22	chr3:119707400-119712000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:119707400-119716600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:119707600-119712000	Weak transcription	Small Intestine	intestine
25	chr3:119708200-119716800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:119708400-119710400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:119708600-119710200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:119708800-119711400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:119709000-119710200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr3:119709000-119722600	Weak transcription	Ovary	ovary
31	chr3:119709200-119710200	Enhancers	HMEC	breast
32	chr3:119709200-119710400	Enhancers	Hela-S3	cervix
33	chr3:119709200-119723000	Weak transcription	Spleen	Spleen
34	chr3:119709400-119710400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:119709400-119710600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:119709400-119716800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr3:119709600-119710200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:119709600-119710400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:119709600-119717000	Weak transcription	Left Ventricle	heart
40	chr3:119709800-119710200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:119709800-119710200	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr3:119709800-119710400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr3:119709800-119710400	Enhancers	NHDF-Ad	bronchial
44	chr3:119709800-119710600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:119709800-119711200	Enhancers	Osteobl	bone
46	chr3:119709800-119712600	Weak transcription	Psoas Muscle	Psoas
47	chr3:119710000-119710200	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr3:119710000-119710200	Enhancers	Duodenum Mucosa	Duodenum
49	chr3:119710000-119710200	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr3:119710000-119710200	Enhancers	Rectal Smooth Muscle	rectum

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