Variant report

Variant	rs6793624
Chromosome Location	chr3:150514760-150514761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73003798	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7621184	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7624442	0.87[AMR][1000 genomes]
rs7631987	1.00[AMR][1000 genomes]
rs7643407	0.87[AMR][1000 genomes]
rs7651357	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7652779	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150509800-150518400	Weak transcription	Aorta	Aorta
2	chr3:150511600-150518800	Enhancers	Placenta	Placenta
3	chr3:150512200-150516000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:150512600-150515600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:150513800-150516000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:150514200-150515800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:150514200-150516000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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