Variant report

Variant	rs73003798
Chromosome Location	chr3:150515961-150515962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150479452..150483209-chr3:150511861..150516305,5	MCF-7	breast:
2	chr3:150507241..150509136-chr3:150514867..150517780,2	MCF-7	breast:
3	chr3:150511520..150513316-chr3:150514355..150516169,2	K562	blood:
4	chr3:150488049..150489741-chr3:150515529..150517629,2	K562	blood:
5	chr3:150473033..150475794-chr3:150515641..150518392,2	K562	blood:

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6793624	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73005806	0.87[AMR][1000 genomes]
rs73010951	0.85[AMR][1000 genomes]
rs73010958	0.85[AMR][1000 genomes]
rs73010969	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7621184	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624442	1.00[AMR][1000 genomes]
rs7631987	0.87[AMR][1000 genomes]
rs7643407	1.00[AMR][1000 genomes]
rs7651357	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7652779	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150509800-150518400	Weak transcription	Aorta	Aorta
2	chr3:150511600-150518800	Enhancers	Placenta	Placenta
3	chr3:150512200-150516000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:150513800-150516000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:150514200-150516000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:150515400-150516000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:150515600-150516000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:150515600-150517000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:150515600-150517000	Enhancers	HepG2	liver
10	chr3:150515800-150516000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:150515800-150516000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:150515800-150516400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:150515800-150516400	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:150515800-150516400	Enhancers	Liver	Liver
15	chr3:150515800-150516400	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr3:150515800-150516400	Bivalent Enhancer	Osteobl	bone
17	chr3:150515800-150516600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:150515800-150516600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:150515800-150516600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:150515800-150516600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr3:150515800-150516600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:150515800-150516600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:150515800-150516600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr3:150515800-150516800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:150515800-150517000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr3:150515800-150517000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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