Variant report

Variant	rs73010958
Chromosome Location	chr3:150493629-150493630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73003798	0.85[AMR][1000 genomes]
rs73010951	1.00[AMR][1000 genomes]
rs73010969	1.00[AMR][1000 genomes]
rs73010978	0.85[AMR][1000 genomes]
rs7621184	0.85[AMR][1000 genomes]
rs7624442	0.85[AMR][1000 genomes]
rs7643407	0.85[AMR][1000 genomes]
rs7651357	0.85[AMR][1000 genomes]
rs7652779	0.85[AMR][1000 genomes]
rs8072	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv966961	chr3:150490481-150498929	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150484200-150498600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:150484800-150493800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:150491800-150497200	Weak transcription	HepG2	liver
4	chr3:150492800-150493800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:150493200-150496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:150493200-150496400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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